Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.46926 * 240.00099 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47227 * 119.99890 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 O 1.43759 * 109.63106 * 294.36013 * 12 11 10 14 14 C 1.44781 * 104.81601 * 215.80739 * 13 12 11 15 15 C 1.54912 * 101.72078 * 36.10850 * 14 13 12 16 16 O 1.43369 * 109.63471 * 175.00290 * 12 11 10 17 17 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 19 19 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 20 20 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 21 21 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 22 22 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 23 23 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 24 24 H 1.08999 * 109.62961 * 54.60401 * 12 11 10 25 25 H 1.08998 * 110.98115 * 277.99652 * 14 13 12 26 26 H 1.09004 * 111.00681 * 154.22573 * 14 13 12 27 27 H 1.09006 * 110.68901 * 206.04113 * 15 14 13 28 28 H 1.08996 * 110.84863 * 82.90412 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 8 3.2129 -6.1548 -1.2316 14 6 3.4113 -7.5557 -1.5389 15 6 2.0807 -8.1774 -1.0460 16 8 1.7651 -7.3902 0.1200 17 1 -0.4849 0.8400 -0.0004 18 1 0.6247 -2.5571 -0.8897 19 1 0.6241 -2.5567 0.8903 20 1 2.8719 -3.6044 -0.8895 21 1 2.8719 -3.6043 0.8905 22 1 0.8539 -5.0446 0.8914 23 1 0.8533 -5.0451 -0.8886 24 1 3.1644 -6.0415 0.8387 25 1 4.2593 -7.9601 -0.9864 26 1 3.5388 -7.7063 -2.6109 27 1 2.2211 -9.2245 -0.7775 28 1 1.3018 -8.0760 -1.8017 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201139089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -133.187671 kcal Electronic energy + Delta-G solvation = -11313.995534 eV Core-core repulsion = 9135.545072 eV Total energy + Delta-G solvation = -2178.450463 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.28040 -36.47611 -35.96821 -34.34898 -31.35122 -29.17315 -26.17417 -24.18745 -23.17679 -21.88350 -18.53469 -18.15012 -17.62686 -16.96974 -16.51243 -15.72993 -15.25222 -14.61211 -14.56578 -13.88797 -13.73252 -13.58753 -13.20108 -12.67533 -12.50305 -12.38390 -12.25668 -11.53177 -11.43791 -11.24367 -11.15430 -10.55371 -10.48977 -8.19955 -6.31771 1.39710 1.43728 1.51667 2.40988 2.52354 3.02346 3.12576 3.71633 3.93511 4.00646 4.12024 4.29429 4.37274 4.56113 4.64396 4.77602 4.82353 4.96795 5.09422 5.19261 5.26013 5.51874 5.73561 5.84934 6.11196 6.24736 6.84536 7.37362 8.91985 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.094885 B = 0.007145 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.022592 B = 3917.847072 C = 4085.940907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.091 4.091 11 C -0.124 4.124 12 C 0.239 3.761 13 O -0.399 6.399 14 C 0.009 3.991 15 C 0.014 3.986 16 O -0.406 6.406 17 H 0.264 0.736 18 H -0.012 1.012 19 H -0.007 1.007 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -15.056 -2.088 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.128 4.128 11 C -0.162 4.162 12 C 0.144 3.856 13 O -0.320 6.320 14 C -0.066 4.066 15 C -0.062 4.062 16 O -0.327 6.327 17 H 0.073 0.927 18 H 0.007 0.993 19 H 0.012 0.988 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.253 -14.821 -2.038 16.215 hybrid contribution 0.012 0.896 -0.068 0.898 sum 6.265 -13.925 -2.106 15.414 Atomic orbital electron populations 1.70101 1.07877 1.27902 1.51607 1.26035 0.95828 1.03521 0.94610 0.85450 0.78241 0.77801 0.79247 1.19182 1.20666 1.18999 1.21685 0.93574 0.92414 1.50742 0.92182 1.19021 0.94430 0.93192 0.94744 1.21302 0.97966 0.92848 1.00732 1.21965 0.98031 0.93657 1.02552 1.24075 0.88856 0.84950 0.87682 1.89296 1.74781 1.26560 1.41383 1.24679 0.97913 0.79481 1.04563 1.24452 0.96551 0.97620 0.87562 1.88863 1.71290 1.28817 1.43758 0.92708 0.99337 0.98821 0.93143 0.92598 0.90514 0.92484 0.89015 0.88975 0.85306 0.85313 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 13.29 21.45 0.28 -58.39 15 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 15 3 Si 0.97 45.43 29.54 68.60 2.03 47.45 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.55 -32.55 9.11 25.60 0.23 -32.31 15 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 15 9 C 0.02 1.30 4.97 29.85 0.15 1.45 15 10 C -0.09 -4.05 5.06 30.60 0.15 -3.89 15 11 C -0.12 -4.70 5.30 30.59 0.16 -4.54 15 12 C 0.24 7.54 4.01 71.98 0.29 7.83 15 13 O -0.40 -12.33 10.93 -126.22 -1.38 -13.71 15 14 C 0.01 0.18 7.95 72.64 0.58 0.75 15 15 C 0.01 0.27 8.07 72.64 0.59 0.85 15 16 O -0.41 -11.71 11.21 -126.22 -1.42 -13.12 15 17 H 0.26 15.52 8.31 -92.71 -0.77 14.74 15 18 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 19 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 15 20 H 0.05 2.27 7.85 -2.39 -0.02 2.26 15 21 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.08 2.86 8.14 -2.39 -0.02 2.85 15 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 15 24 H 0.09 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 26 H 0.13 1.83 8.14 -2.38 -0.02 1.81 15 27 H 0.13 1.62 8.14 -2.38 -0.02 1.60 15 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 Total: -1.00 -69.56 241.55 3.25 -66.31 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.11 Total: 1.01 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 2.61 Total: -29.54 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.28 Total: -58.39 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -2.79 Total: -26.84 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.56 3.25 -66.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201139089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.878 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds