Wall clock time and date at job start Mon Mar 30 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53173 * 109.16229 * 182.39751 * 4 2 1 6 6 C 1.53171 * 109.03669 * 56.98045 * 5 4 2 7 7 H 1.09007 * 109.52498 * 183.04603 * 6 5 4 8 8 O 1.42906 * 109.52058 * 62.92773 * 6 5 4 9 9 C 1.53090 * 109.16805 * 303.01726 * 6 5 4 10 10 H 1.08992 * 109.47986 * 297.62818 * 9 6 5 11 11 C 1.50700 * 109.48343 * 177.60023 * 9 6 5 12 12 H 1.07998 * 119.99603 * 0.02562 * 11 9 6 13 13 C 1.37879 * 120.00170 * 180.02562 * 11 9 6 14 14 N 1.31510 * 119.99961 * 180.02562 * 13 11 9 15 15 Si 1.86797 * 119.99662 * 0.02562 * 13 11 9 16 16 H 1.48497 * 109.47231 * 90.00329 * 15 13 11 17 17 H 1.48505 * 109.47229 * 210.00089 * 15 13 11 18 18 H 1.48501 * 109.47314 * 330.00055 * 15 13 11 19 19 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 20 20 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 22 22 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 23 23 H 1.08999 * 109.51953 * 302.30753 * 4 2 1 24 24 H 1.09009 * 109.51672 * 62.43170 * 4 2 1 25 25 H 1.08994 * 109.54460 * 176.85324 * 5 4 2 26 26 H 1.09009 * 109.54146 * 297.11538 * 5 4 2 27 27 H 0.96699 * 114.00129 * 59.99827 * 8 6 5 28 28 H 0.97006 * 119.99652 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5711 -0.7706 -1.2124 6 6 4.0178 -1.4597 0.0805 7 1 5.1062 -1.4503 0.1411 8 8 3.5509 -2.8103 0.0877 9 6 3.4311 -0.7091 1.2788 10 1 3.8194 0.3091 1.2955 11 6 3.8176 -1.4154 2.5527 12 1 4.4216 -2.3098 2.5122 13 6 3.4002 -0.9199 3.7697 14 7 3.7379 -1.5360 4.8814 15 14 2.3549 0.6267 3.8395 16 1 0.9181 0.2563 3.7780 17 1 2.6256 1.3504 5.1077 18 1 2.6899 1.5030 2.6883 19 8 2.0068 -0.6741 1.1663 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6444 -1.7374 -1.2710 24 1 1.7137 -0.1848 -2.1400 25 1 3.9392 -1.3322 -2.0710 26 1 3.9688 0.2440 -1.2411 27 1 3.8802 -3.3442 -0.6482 28 1 3.4439 -1.1875 5.7376 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207555227.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:32 Heat of formation + Delta-G solvation = -103.781144 kcal Electronic energy + Delta-G solvation = -12286.983471 eV Core-core repulsion = 10109.808171 eV Total energy + Delta-G solvation = -2177.175300 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.86250 -35.43621 -33.16581 -31.92303 -30.84309 -27.73922 -25.00811 -22.44580 -20.94485 -19.46423 -16.84619 -16.28631 -15.56646 -14.96272 -14.40276 -14.08267 -13.32974 -12.73757 -12.53760 -12.26852 -11.92741 -11.63690 -11.34838 -11.11179 -10.70194 -10.53438 -10.38193 -10.01551 -9.55111 -9.19613 -8.96427 -8.53811 -8.26700 -6.04467 -4.10826 3.44691 3.49154 3.58364 4.52797 4.64892 5.10545 5.24481 5.32880 5.39026 5.58119 5.68068 5.81730 5.96026 6.03584 6.10832 6.22772 6.26633 6.46386 6.59900 6.64906 6.65280 6.89290 7.63287 8.41434 8.47045 8.66440 9.02506 9.57878 11.05915 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040348 B = 0.019436 C = 0.014692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.800723 B = 1440.285307 C = 1905.386725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.040 0.960 4 C -0.138 4.138 5 C -0.158 4.158 6 C 0.089 3.911 7 H 0.052 0.948 8 O -0.536 6.536 9 C 0.189 3.811 10 H 0.027 0.973 11 C -0.498 4.498 12 H 0.084 0.916 13 C 0.080 3.920 14 N -0.892 5.892 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.302 1.302 18 H -0.273 1.273 19 O -0.368 6.368 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.351 0.649 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 3.541 -11.626 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.058 0.942 4 C -0.175 4.175 5 C -0.195 4.195 6 C 0.030 3.970 7 H 0.070 0.930 8 O -0.337 6.337 9 C 0.133 3.867 10 H 0.045 0.955 11 C -0.535 4.535 12 H 0.102 0.898 13 C -0.124 4.124 14 N -0.530 5.530 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.230 1.230 18 H -0.198 1.198 19 O -0.289 6.289 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.194 0.806 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.949 3.668 -10.750 11.735 hybrid contribution -0.081 0.711 -0.701 1.001 sum -3.030 4.379 -11.450 12.628 Atomic orbital electron populations 1.21730 0.94602 1.02421 1.01108 1.21923 0.94315 0.94745 0.87660 0.94238 1.22042 0.95615 1.01959 0.97923 1.22397 0.96866 1.01279 0.98997 1.22424 0.96920 0.82833 0.94830 0.93008 1.86840 1.74391 1.21785 1.50708 1.20355 0.78391 0.94192 0.93743 0.95521 1.20853 1.32132 1.13319 0.87198 0.89774 1.25065 0.94440 0.97461 0.95450 1.69931 1.45065 1.40130 0.97848 0.86345 0.81561 0.82596 0.75803 1.20047 1.23026 1.19788 1.88281 1.24771 1.76313 1.39498 0.91989 0.92493 0.92370 0.90867 0.92553 0.92421 0.91728 0.80579 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.57 37.16 0.36 -2.00 15 2 C 0.07 1.41 3.26 -26.68 -0.09 1.32 15 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 4 C -0.14 -2.29 5.26 -26.59 -0.14 -2.43 15 5 C -0.16 -2.59 5.72 -26.55 -0.15 -2.74 15 6 C 0.09 1.85 3.23 -26.60 -0.09 1.77 15 7 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 8 O -0.54 -11.37 12.22 -42.71 -0.52 -11.89 15 9 C 0.19 4.75 1.76 -27.84 -0.05 4.70 15 10 H 0.03 0.68 7.20 -51.93 -0.37 0.31 15 11 C -0.50 -14.84 9.01 -34.44 -0.31 -15.15 15 12 H 0.08 2.70 7.88 -52.49 -0.41 2.29 15 13 C 0.08 2.42 5.47 -17.82 -0.10 2.32 15 14 N -0.89 -28.14 13.96 55.43 0.77 -27.37 15 15 Si 0.91 23.83 26.18 -169.99 -4.45 19.38 15 16 H -0.27 -7.28 7.11 56.52 0.40 -6.87 15 17 H -0.30 -7.75 7.11 56.52 0.40 -7.35 15 18 H -0.27 -6.85 6.54 56.52 0.37 -6.48 15 19 O -0.37 -9.19 7.67 -42.71 -0.33 -9.52 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.07 1.27 7.83 -51.93 -0.41 0.87 15 24 H 0.06 0.78 8.14 -51.92 -0.42 0.35 15 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.06 1.00 8.14 -51.92 -0.42 0.58 15 27 H 0.35 5.39 9.08 45.56 0.41 5.80 15 28 H 0.26 7.80 8.31 -40.82 -0.34 7.46 15 LS Contribution 229.52 15.07 3.46 3.46 Total: -1.00 -33.42 229.52 -4.96 -38.38 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.33 Total: -0.22 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.57 Total: -12.22 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.85 Total: -21.41 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -4.45 Total: 19.38 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -33.42 -4.96 -38.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207555227.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.397 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds