Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53173 * 109.16229 * 182.39751 * 4 2 1 6 6 C 1.53171 * 109.03669 * 56.98045 * 5 4 2 7 7 H 1.09007 * 109.52498 * 183.04603 * 6 5 4 8 8 O 1.42906 * 109.52058 * 62.92773 * 6 5 4 9 9 C 1.53090 * 109.16805 * 303.01726 * 6 5 4 10 10 H 1.08992 * 109.47986 * 297.62818 * 9 6 5 11 11 C 1.50700 * 109.48343 * 177.60023 * 9 6 5 12 12 H 1.07998 * 119.99603 * 0.02562 * 11 9 6 13 13 C 1.37879 * 120.00170 * 180.02562 * 11 9 6 14 14 N 1.31510 * 119.99961 * 180.02562 * 13 11 9 15 15 Si 1.86797 * 119.99662 * 0.02562 * 13 11 9 16 16 H 1.48497 * 109.47231 * 90.00329 * 15 13 11 17 17 H 1.48505 * 109.47229 * 210.00089 * 15 13 11 18 18 H 1.48501 * 109.47314 * 330.00055 * 15 13 11 19 19 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 20 20 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 22 22 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 23 23 H 1.08999 * 109.51953 * 302.30753 * 4 2 1 24 24 H 1.09009 * 109.51672 * 62.43170 * 4 2 1 25 25 H 1.08994 * 109.54460 * 176.85324 * 5 4 2 26 26 H 1.09009 * 109.54146 * 297.11538 * 5 4 2 27 27 H 0.96699 * 114.00129 * 59.99827 * 8 6 5 28 28 H 0.97006 * 119.99652 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5711 -0.7706 -1.2124 6 6 4.0178 -1.4597 0.0805 7 1 5.1062 -1.4503 0.1411 8 8 3.5509 -2.8103 0.0877 9 6 3.4311 -0.7091 1.2788 10 1 3.8194 0.3091 1.2955 11 6 3.8176 -1.4154 2.5527 12 1 4.4216 -2.3098 2.5122 13 6 3.4002 -0.9199 3.7697 14 7 3.7379 -1.5360 4.8814 15 14 2.3549 0.6267 3.8395 16 1 0.9181 0.2563 3.7780 17 1 2.6256 1.3504 5.1077 18 1 2.6899 1.5030 2.6883 19 8 2.0068 -0.6741 1.1663 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6444 -1.7374 -1.2710 24 1 1.7137 -0.1848 -2.1400 25 1 3.9392 -1.3322 -2.0710 26 1 3.9688 0.2440 -1.2411 27 1 3.8802 -3.3442 -0.6482 28 1 3.4439 -1.1875 5.7376 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000207555227.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -130.041801 kcal Electronic energy + Delta-G solvation = -12288.122219 eV Core-core repulsion = 10109.808171 eV Total energy + Delta-G solvation = -2178.314047 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.48816 -37.06954 -35.12678 -33.72367 -32.44884 -29.52714 -26.70575 -24.08902 -22.59608 -21.05532 -19.04357 -17.87785 -17.18376 -16.80842 -16.04641 -15.79305 -14.99719 -14.52212 -14.21199 -13.99524 -13.34188 -13.23739 -12.83653 -12.73687 -12.54129 -12.21036 -11.90775 -11.81481 -11.56642 -10.99714 -10.78928 -10.59861 -9.95564 -8.35066 -6.45988 1.32271 1.40805 1.49672 2.36274 2.77310 3.47577 3.65419 3.87933 4.02606 4.07032 4.24708 4.39503 4.56308 4.71097 4.79577 4.88815 4.91528 4.98083 5.08287 5.17832 5.29913 5.44450 5.55176 6.22468 6.57615 6.87717 7.16179 7.27768 8.79560 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040348 B = 0.019436 C = 0.014692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.800723 B = 1440.285307 C = 1905.386725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 H 0.047 0.953 4 C -0.132 4.132 5 C -0.148 4.148 6 C 0.087 3.913 7 H 0.052 0.948 8 O -0.565 6.565 9 C 0.186 3.814 10 H 0.029 0.971 11 C -0.511 4.511 12 H 0.041 0.959 13 C 0.022 3.978 14 N -0.940 5.940 15 Si 0.971 3.029 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.254 1.254 19 O -0.401 6.401 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.376 0.624 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 5.141 -14.211 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.004 4.004 3 H 0.065 0.935 4 C -0.169 4.169 5 C -0.185 4.185 6 C 0.027 3.973 7 H 0.070 0.930 8 O -0.371 6.371 9 C 0.131 3.869 10 H 0.046 0.954 11 C -0.548 4.548 12 H 0.059 0.941 13 C -0.177 4.177 14 N -0.580 5.580 15 Si 0.798 3.202 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.178 1.178 19 O -0.322 6.322 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.223 0.777 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.892 5.263 -13.370 14.886 hybrid contribution 0.226 0.130 0.045 0.265 sum -3.666 5.394 -13.325 14.835 Atomic orbital electron populations 1.21763 0.92654 1.02478 1.02642 1.22395 0.95999 0.94975 0.87000 0.93477 1.22015 0.95489 1.01549 0.97884 1.22328 0.96893 1.01955 0.97361 1.22320 0.96649 0.82770 0.95518 0.93026 1.86757 1.74926 1.22628 1.52756 1.20150 0.79184 0.94201 0.93408 0.95392 1.21108 1.31694 1.12013 0.89965 0.94115 1.25956 0.95848 1.00850 0.95061 1.70061 1.47103 1.42243 0.98585 0.85332 0.79152 0.79032 0.76695 1.20492 1.22101 1.17775 1.88128 1.23893 1.77495 1.42647 0.92688 0.93603 0.88206 0.91879 0.88507 0.88894 0.90349 0.77704 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.57 71.98 0.69 -3.47 15 2 C 0.05 1.93 3.26 30.63 0.10 2.03 15 3 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 4 C -0.13 -3.81 5.26 30.68 0.16 -3.65 15 5 C -0.15 -4.25 5.72 30.71 0.18 -4.07 15 6 C 0.09 3.47 3.23 30.68 0.10 3.56 15 7 H 0.05 2.02 8.14 -2.38 -0.02 2.00 15 8 O -0.57 -23.59 12.22 -141.83 -1.73 -25.33 15 9 C 0.19 9.28 1.76 29.88 0.05 9.33 15 10 H 0.03 1.39 7.20 -2.39 -0.02 1.37 15 11 C -0.51 -31.33 9.01 25.60 0.23 -31.10 15 12 H 0.04 2.76 7.88 -2.91 -0.02 2.74 15 13 C 0.02 1.36 5.47 84.66 0.46 1.82 15 14 N -0.94 -61.38 13.96 21.45 0.30 -61.08 15 15 Si 0.97 49.59 26.18 68.60 1.80 51.39 15 16 H -0.28 -14.31 7.11 99.48 0.71 -13.60 15 17 H -0.29 -14.38 7.11 99.48 0.71 -13.67 15 18 H -0.25 -11.98 6.54 99.48 0.65 -11.33 15 19 O -0.40 -19.48 7.67 -141.83 -1.09 -20.57 15 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.06 1.97 7.83 -2.39 -0.02 1.95 15 24 H 0.10 2.06 8.14 -2.38 -0.02 2.04 15 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.08 2.06 8.14 -2.38 -0.02 2.05 15 27 H 0.38 10.95 9.08 -74.06 -0.67 10.27 15 28 H 0.27 16.28 8.31 -92.70 -0.77 15.51 15 Total: -1.00 -74.57 229.52 1.65 -72.92 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.41 Total: 8.21 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 1.97 Total: -25.53 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.30 Total: -61.08 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.82 Total: -45.90 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.80 Total: 51.39 kcal Total: -74.57 1.65 -72.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207555227.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.124 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds