Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48445 * 2 1 4 4 C 1.53086 * 109.48363 * 239.97373 * 2 1 3 5 5 C 1.53183 * 109.16668 * 182.40983 * 4 2 1 6 6 C 1.53171 * 109.03558 * 56.97951 * 5 4 2 7 7 H 1.09002 * 109.52187 * 62.92694 * 6 5 4 8 8 O 1.42899 * 109.52203 * 183.11562 * 6 5 4 9 9 C 1.53093 * 109.16397 * 303.02010 * 6 5 4 10 10 H 1.08995 * 109.48313 * 297.62813 * 9 6 5 11 11 C 1.50699 * 109.48129 * 177.60021 * 9 6 5 12 12 H 1.08005 * 120.00104 * 0.02562 * 11 9 6 13 13 C 1.37876 * 120.00374 * 179.97438 * 11 9 6 14 14 N 1.31513 * 120.00431 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 119.99797 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.47132 * 89.99386 * 15 13 11 17 17 H 1.48493 * 109.47281 * 209.99556 * 15 13 11 18 18 H 1.48499 * 109.47218 * 330.00190 * 15 13 11 19 19 O 1.42904 * 109.47985 * 120.03031 * 2 1 3 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.02618 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.02599 * 1 2 3 23 23 H 1.09001 * 109.52304 * 302.31900 * 4 2 1 24 24 H 1.09000 * 109.52267 * 62.44174 * 4 2 1 25 25 H 1.08998 * 109.54138 * 176.85179 * 5 4 2 26 26 H 1.09000 * 109.53851 * 297.02292 * 5 4 2 27 27 H 0.96696 * 114.00260 * 299.99987 * 8 6 5 28 28 H 0.97002 * 119.99956 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7708 -1.2121 6 6 4.0176 -1.4601 0.0809 7 1 3.6613 -2.4902 0.0863 8 8 5.4443 -1.4466 0.1611 9 6 3.4307 -0.7093 1.2791 10 1 3.8192 0.3089 1.2959 11 6 3.8170 -1.4157 2.5530 12 1 4.4209 -2.3103 2.5127 13 6 3.4003 -0.9196 3.7700 14 7 3.7369 -1.5363 4.8817 15 14 2.3564 0.6280 3.8398 16 1 0.9193 0.2588 3.7785 17 1 2.6280 1.3515 5.1078 18 1 2.6919 1.5037 2.6884 19 8 2.0065 -0.6742 1.1664 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5134 -0.8902 22 1 -0.3634 0.5143 0.8898 23 1 1.6443 -1.7374 -1.2710 24 1 1.7140 -0.1848 -2.1398 25 1 3.9392 -1.3325 -2.0707 26 1 3.9690 0.2435 -1.2423 27 1 5.8837 -1.9012 -0.5704 28 1 3.4435 -1.1874 5.7379 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207555307.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = -106.020732 kcal Electronic energy + Delta-G solvation = -12184.551304 eV Core-core repulsion = 10007.278888 eV Total energy + Delta-G solvation = -2177.272416 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.86190 -35.78315 -33.21599 -32.00092 -30.88616 -27.69961 -24.86798 -22.50335 -20.95089 -19.65368 -16.86869 -16.71708 -15.65701 -14.97633 -14.18556 -13.88064 -13.19966 -13.05631 -12.71432 -12.45513 -12.00936 -11.75486 -11.42514 -10.98050 -10.86281 -10.62061 -10.25881 -9.98832 -9.61216 -9.48690 -8.88311 -8.54599 -8.38440 -6.05387 -4.11670 3.45640 3.48816 3.57708 4.43730 4.57930 5.06234 5.15956 5.28144 5.39898 5.53179 5.64993 5.74015 5.88481 5.97200 6.08720 6.12156 6.31588 6.39508 6.46643 6.56205 6.61284 7.06760 7.64090 8.24880 8.53096 8.53640 8.99432 9.56715 11.04909 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.020165 C = 0.014064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.730410 B = 1388.178720 C = 1990.350876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.045 0.955 4 C -0.140 4.140 5 C -0.157 4.157 6 C 0.091 3.909 7 H 0.054 0.946 8 O -0.548 6.548 9 C 0.189 3.811 10 H 0.024 0.976 11 C -0.498 4.498 12 H 0.084 0.916 13 C 0.080 3.920 14 N -0.891 5.891 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.301 1.301 18 H -0.272 1.272 19 O -0.373 6.373 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.359 0.641 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 2.848 -11.710 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.063 0.937 4 C -0.178 4.178 5 C -0.195 4.195 6 C 0.032 3.968 7 H 0.072 0.928 8 O -0.350 6.350 9 C 0.134 3.866 10 H 0.042 0.958 11 C -0.535 4.535 12 H 0.102 0.898 13 C -0.124 4.124 14 N -0.529 5.529 15 Si 0.737 3.263 16 H -0.201 1.201 17 H -0.229 1.229 18 H -0.197 1.197 19 O -0.294 6.294 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.203 0.797 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.895 3.099 -10.832 11.921 hybrid contribution -0.301 0.530 -0.715 0.940 sum -4.196 3.629 -11.547 12.810 Atomic orbital electron populations 1.21742 0.94354 1.02452 1.01378 1.21977 0.94392 0.95275 0.87266 0.93713 1.22132 0.95479 1.01685 0.98467 1.22434 0.96331 1.01781 0.98988 1.22405 0.80758 0.98928 0.94755 0.92790 1.86688 1.18628 1.79739 1.49964 1.20146 0.77447 0.95592 0.93427 0.95848 1.20839 1.31620 1.13684 0.87322 0.89818 1.25064 0.94516 0.97411 0.95410 1.69927 1.45004 1.40137 0.97851 0.86343 0.81241 0.82745 0.75987 1.20055 1.22922 1.19700 1.88297 1.24764 1.76494 1.39838 0.92001 0.92191 0.92306 0.91308 0.91893 0.92429 0.91690 0.79728 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.56 37.16 0.36 -1.88 15 2 C 0.07 1.31 3.26 -26.69 -0.09 1.22 15 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 4 C -0.14 -2.22 5.42 -26.59 -0.14 -2.36 15 5 C -0.16 -2.62 5.65 -26.55 -0.15 -2.77 15 6 C 0.09 1.92 3.02 -26.60 -0.08 1.84 15 7 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 8 O -0.55 -11.34 13.02 -35.23 -0.46 -11.80 15 9 C 0.19 4.83 1.71 -27.84 -0.05 4.78 15 10 H 0.02 0.63 7.20 -51.93 -0.37 0.26 15 11 C -0.50 -14.93 9.09 -34.44 -0.31 -15.25 15 12 H 0.08 2.70 7.99 -52.48 -0.42 2.28 15 13 C 0.08 2.44 5.47 -17.82 -0.10 2.34 15 14 N -0.89 -28.14 13.96 55.43 0.77 -27.37 15 15 Si 0.91 23.90 26.18 -169.99 -4.45 19.44 15 16 H -0.27 -7.16 7.11 56.52 0.40 -6.76 15 17 H -0.30 -7.77 7.11 56.52 0.40 -7.37 15 18 H -0.27 -6.96 6.54 56.52 0.37 -6.59 15 19 O -0.37 -9.04 7.75 -35.23 -0.27 -9.31 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.36 5.25 9.08 45.56 0.41 5.66 15 28 H 0.27 7.81 8.31 -40.82 -0.34 7.47 15 LS Contribution 230.70 15.07 3.48 3.48 Total: -1.00 -33.20 230.70 -4.85 -38.05 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.35 Total: -0.41 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.56 Total: -12.09 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.73 Total: -21.11 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.45 Total: 19.44 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -33.20 -4.85 -38.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207555307.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.969 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds