Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48445 * 2 1 4 4 C 1.53086 * 109.48363 * 239.97373 * 2 1 3 5 5 C 1.53183 * 109.16668 * 182.40983 * 4 2 1 6 6 C 1.53171 * 109.03558 * 56.97951 * 5 4 2 7 7 H 1.09002 * 109.52187 * 62.92694 * 6 5 4 8 8 O 1.42899 * 109.52203 * 183.11562 * 6 5 4 9 9 C 1.53093 * 109.16397 * 303.02010 * 6 5 4 10 10 H 1.08995 * 109.48313 * 297.62813 * 9 6 5 11 11 C 1.50699 * 109.48129 * 177.60021 * 9 6 5 12 12 H 1.08005 * 120.00104 * 0.02562 * 11 9 6 13 13 C 1.37876 * 120.00374 * 179.97438 * 11 9 6 14 14 N 1.31513 * 120.00431 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 119.99797 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.47132 * 89.99386 * 15 13 11 17 17 H 1.48493 * 109.47281 * 209.99556 * 15 13 11 18 18 H 1.48499 * 109.47218 * 330.00190 * 15 13 11 19 19 O 1.42904 * 109.47985 * 120.03031 * 2 1 3 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.02618 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.02599 * 1 2 3 23 23 H 1.09001 * 109.52304 * 302.31900 * 4 2 1 24 24 H 1.09000 * 109.52267 * 62.44174 * 4 2 1 25 25 H 1.08998 * 109.54138 * 176.85179 * 5 4 2 26 26 H 1.09000 * 109.53851 * 297.02292 * 5 4 2 27 27 H 0.96696 * 114.00260 * 299.99987 * 8 6 5 28 28 H 0.97002 * 119.99956 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7708 -1.2121 6 6 4.0176 -1.4601 0.0809 7 1 3.6613 -2.4902 0.0863 8 8 5.4443 -1.4466 0.1611 9 6 3.4307 -0.7093 1.2791 10 1 3.8192 0.3089 1.2959 11 6 3.8170 -1.4157 2.5530 12 1 4.4209 -2.3103 2.5127 13 6 3.4003 -0.9196 3.7700 14 7 3.7369 -1.5363 4.8817 15 14 2.3564 0.6280 3.8398 16 1 0.9193 0.2588 3.7785 17 1 2.6280 1.3515 5.1078 18 1 2.6919 1.5037 2.6884 19 8 2.0065 -0.6742 1.1664 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5134 -0.8902 22 1 -0.3634 0.5143 0.8898 23 1 1.6443 -1.7374 -1.2710 24 1 1.7140 -0.1848 -2.1398 25 1 3.9392 -1.3325 -2.0707 26 1 3.9690 0.2435 -1.2423 27 1 5.8837 -1.9012 -0.5704 28 1 3.4435 -1.1874 5.7379 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000207555307.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = -132.553110 kcal Electronic energy + Delta-G solvation = -12185.701834 eV Core-core repulsion = 10007.278888 eV Total energy + Delta-G solvation = -2178.422946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.49877 -37.40628 -35.15277 -33.82650 -32.46692 -29.52093 -26.54593 -24.14051 -22.60015 -21.23600 -19.06094 -18.36413 -17.26218 -16.86403 -15.89631 -15.56337 -14.90908 -14.66194 -14.32736 -14.20769 -13.38006 -13.29440 -12.90131 -12.81627 -12.62326 -12.23141 -11.91733 -11.69028 -11.57713 -11.27987 -10.85533 -10.59059 -10.08833 -8.37454 -6.48766 1.31521 1.39133 1.48146 2.34339 2.68758 3.34170 3.67328 3.84354 3.92231 4.03296 4.23856 4.35789 4.37420 4.67274 4.80573 4.84992 4.91486 5.00161 5.07994 5.13212 5.29821 5.41800 5.52863 6.19195 6.50586 6.77461 7.06119 7.24872 8.77108 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.020165 C = 0.014064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.730410 B = 1388.178720 C = 1990.350876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 H 0.045 0.955 4 C -0.134 4.134 5 C -0.147 4.147 6 C 0.091 3.909 7 H 0.043 0.957 8 O -0.573 6.573 9 C 0.193 3.807 10 H 0.009 0.991 11 C -0.514 4.514 12 H 0.041 0.959 13 C 0.024 3.976 14 N -0.938 5.938 15 Si 0.971 3.029 16 H -0.269 1.269 17 H -0.293 1.293 18 H -0.262 1.262 19 O -0.399 6.399 20 H 0.061 0.939 21 H 0.101 0.899 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.385 0.615 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 4.153 -14.268 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.007 4.007 3 H 0.063 0.937 4 C -0.172 4.172 5 C -0.185 4.185 6 C 0.032 3.968 7 H 0.061 0.939 8 O -0.379 6.379 9 C 0.137 3.863 10 H 0.026 0.974 11 C -0.551 4.551 12 H 0.059 0.941 13 C -0.176 4.176 14 N -0.577 5.577 15 Si 0.797 3.203 16 H -0.194 1.194 17 H -0.220 1.220 18 H -0.186 1.186 19 O -0.320 6.320 20 H 0.080 0.920 21 H 0.119 0.881 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.234 0.766 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.186 4.394 -13.423 15.045 hybrid contribution 0.141 0.065 0.021 0.157 sum -5.045 4.459 -13.401 14.998 Atomic orbital electron populations 1.21773 0.91896 1.02979 1.02863 1.22469 0.96408 0.95160 0.86627 0.93702 1.22125 0.94598 1.02056 0.98373 1.22345 0.97067 1.01750 0.97298 1.22221 0.80884 0.98216 0.95488 0.93945 1.86607 1.18757 1.80411 1.52169 1.19801 0.78661 0.94567 0.93318 0.97358 1.21089 1.31413 1.12553 0.90082 0.94052 1.25947 0.95905 1.00729 0.94996 1.70050 1.46946 1.42144 0.98583 0.85346 0.79476 0.78970 0.76517 1.19448 1.22002 1.18624 1.88139 1.23200 1.77549 1.43088 0.91970 0.88066 0.93492 0.91053 0.87699 0.88666 0.91522 0.76644 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.56 71.98 0.69 -3.15 15 2 C 0.05 1.76 3.26 30.62 0.10 1.86 15 3 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 4 C -0.13 -3.66 5.42 30.68 0.17 -3.49 15 5 C -0.15 -4.35 5.65 30.71 0.17 -4.18 15 6 C 0.09 3.76 3.02 30.68 0.09 3.86 15 7 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 8 O -0.57 -23.41 13.02 -148.98 -1.94 -25.35 15 9 C 0.19 9.83 1.71 29.88 0.05 9.88 15 10 H 0.01 0.47 7.20 -2.39 -0.02 0.45 15 11 C -0.51 -31.96 9.09 25.60 0.23 -31.73 15 12 H 0.04 2.82 7.99 -2.91 -0.02 2.80 15 13 C 0.02 1.48 5.47 84.65 0.46 1.94 15 14 N -0.94 -61.24 13.96 21.45 0.30 -60.95 15 15 Si 0.97 49.88 26.18 68.60 1.80 51.68 15 16 H -0.27 -13.46 7.11 99.48 0.71 -12.75 15 17 H -0.29 -14.45 7.11 99.48 0.71 -13.75 15 18 H -0.26 -12.84 6.54 99.48 0.65 -12.19 15 19 O -0.40 -18.89 7.75 -148.98 -1.15 -20.04 15 20 H 0.06 1.71 8.14 -2.39 -0.02 1.70 15 21 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.05 1.40 8.14 -2.38 -0.02 1.38 15 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.39 10.66 9.08 -74.06 -0.67 9.99 15 28 H 0.27 16.32 8.31 -92.71 -0.77 15.55 15 Total: -1.00 -74.51 230.70 1.38 -73.13 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.41 Total: 6.53 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 1.97 Total: -25.01 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.30 Total: -60.95 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -3.09 Total: -45.39 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.80 Total: 51.68 kcal Total: -74.51 1.38 -73.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207555307.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.422 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds