Wall clock time and date at job start Mon Mar 30 2020 01:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86794 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47490 * 300.00429 * 3 2 1 6 6 H 1.48499 * 109.46986 * 60.00364 * 3 2 1 7 7 C 1.38889 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99303 * 186.92054 * 7 2 1 9 9 N 1.37194 * 120.00029 * 6.92107 * 7 2 1 10 10 C 1.47092 * 125.55985 * 354.26799 * 9 7 2 11 11 C 1.54084 * 103.78100 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.64069 * 241.31326 * 11 10 9 13 13 C 1.53004 * 110.52242 * 118.63332 * 11 10 9 14 14 N 1.46894 * 109.47204 * 183.95549 * 13 11 10 15 15 O 1.45699 * 104.01059 * 0.02562 * 11 10 9 16 16 C 1.33797 * 109.47499 * 359.97438 * 15 11 10 17 17 O 1.21504 * 123.07452 * 180.02562 * 16 15 11 18 18 H 0.96997 * 119.99367 * 359.97438 * 1 2 3 19 19 H 1.09008 * 110.56155 * 61.40420 * 10 9 7 20 20 H 1.08994 * 110.56663 * 298.55731 * 10 9 7 21 21 H 1.08998 * 109.46724 * 63.95460 * 13 11 10 22 22 H 1.09007 * 109.46760 * 303.95868 * 13 11 10 23 23 H 1.00901 * 111.00136 * 56.04748 * 14 13 11 24 24 H 1.00908 * 110.99943 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.7087 1.3464 -0.0006 5 1 1.8900 2.3965 -1.2124 6 1 1.8900 2.3963 1.2125 7 6 2.0091 -1.2029 -0.0005 8 1 3.0832 -1.2062 0.1122 9 7 1.3306 -2.3866 -0.1442 10 6 -0.1322 -2.5343 -0.1867 11 6 -0.3431 -4.0508 -0.3597 12 1 -0.8649 -4.2621 -1.2931 13 6 -1.1188 -4.6235 0.8283 14 7 -1.2245 -6.0818 0.6869 15 8 1.0087 -4.5931 -0.3957 16 6 1.8926 -3.5966 -0.2690 17 8 3.0948 -3.7729 -0.2674 18 1 -0.4849 0.8401 0.0004 19 1 -0.5475 -1.9907 -1.0354 20 1 -0.5791 -2.1895 0.7457 21 1 -2.1175 -4.1876 0.8542 22 1 -0.5942 -4.3852 1.7536 23 1 -0.3123 -6.5034 0.5957 24 1 -1.7327 -6.4842 1.4602 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211742155.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:33 Heat of formation + Delta-G solvation = -92.103115 kcal Electronic energy + Delta-G solvation = -11702.712313 eV Core-core repulsion = 9422.503067 eV Total energy + Delta-G solvation = -2280.209246 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.28886 -38.09241 -36.82030 -35.37278 -33.64061 -30.71742 -27.58517 -25.34061 -23.29815 -22.17223 -19.70327 -18.11775 -17.59117 -17.32120 -16.47446 -16.24564 -15.63321 -15.47016 -14.83072 -14.36544 -13.93463 -13.59968 -13.11478 -12.86348 -12.74067 -12.34359 -12.11496 -11.57823 -11.29552 -11.14753 -10.07338 -9.71184 -8.47625 -6.05821 1.36945 1.42451 1.56244 1.94743 2.00721 2.38094 3.02388 3.13439 3.33383 3.79594 3.95214 4.05943 4.49205 4.65218 4.72094 5.03205 5.20921 5.33208 6.03325 6.11415 6.39587 6.55313 6.91366 7.21156 7.76843 8.61628 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.060747 B = 0.013180 C = 0.011194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.818693 B = 2123.966919 C = 2500.772423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.002 3.998 3 Si 1.004 2.996 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.334 4.334 8 H 0.085 0.915 9 N -0.467 5.467 10 C 0.115 3.885 11 C 0.059 3.941 12 H 0.128 0.872 13 C 0.068 3.932 14 N -0.846 5.846 15 O -0.345 6.345 16 C 0.566 3.434 17 O -0.620 6.620 18 H 0.280 0.720 19 H 0.086 0.914 20 H 0.086 0.914 21 H 0.118 0.882 22 H 0.023 0.977 23 H 0.344 0.656 24 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 -2.463 1.626 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.200 4.200 3 Si 0.826 3.174 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.460 4.460 8 H 0.103 0.897 9 N -0.200 5.200 10 C -0.008 4.008 11 C 0.003 3.997 12 H 0.146 0.854 13 C -0.063 4.063 14 N -0.377 5.377 15 O -0.256 6.256 16 C 0.320 3.680 17 O -0.516 6.516 18 H 0.090 0.910 19 H 0.104 0.896 20 H 0.104 0.896 21 H 0.136 0.864 22 H 0.042 0.958 23 H 0.157 0.843 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.955 -2.464 0.950 7.439 hybrid contribution 0.954 0.761 0.891 1.511 sum -6.001 -1.703 1.841 6.504 Atomic orbital electron populations 1.69929 1.06458 1.29166 1.48202 1.26083 0.96903 1.02046 0.94974 0.84717 0.77917 0.76162 0.78581 1.19798 1.19258 1.19217 1.19569 0.92588 0.81781 1.52044 0.89697 1.43838 1.06766 1.04835 1.64533 1.22586 0.81338 0.92184 1.04725 1.24424 0.80140 0.92319 1.02852 0.85394 1.22027 1.00506 0.90016 0.93745 1.58705 1.24626 1.03243 1.51088 1.87076 1.18296 1.32830 1.87433 1.18532 0.85415 0.80981 0.83072 1.90767 1.12212 1.85236 1.63358 0.90986 0.89610 0.89621 0.86441 0.95844 0.84345 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.70 10.42 21.66 0.23 -44.48 14 2 C 0.00 0.08 5.48 84.90 0.47 0.54 14 3 Si 1.00 40.69 29.56 68.60 2.03 42.72 14 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 14 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 14 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 14 7 C -0.33 -18.88 9.93 84.01 0.83 -18.04 14 8 H 0.09 5.06 7.69 -2.91 -0.02 5.03 14 9 N -0.47 -25.09 3.08 -764.11 -2.35 -27.44 14 10 C 0.12 5.01 5.31 86.63 0.46 5.47 14 11 C 0.06 2.11 4.13 30.96 0.13 2.24 14 12 H 0.13 4.01 8.14 -2.39 -0.02 3.99 14 13 C 0.07 1.93 6.38 86.31 0.55 2.48 14 14 N -0.85 -20.98 9.62 -186.72 -1.80 -22.77 14 15 O -0.35 -15.71 10.25 -47.55 -0.49 -16.19 14 16 C 0.57 31.10 8.80 129.91 1.14 32.25 14 17 O -0.62 -38.70 17.54 19.67 0.35 -38.36 14 18 H 0.28 12.87 8.31 -92.71 -0.77 12.10 14 19 H 0.09 3.81 7.39 -2.38 -0.02 3.80 14 20 H 0.09 3.73 7.23 -2.39 -0.02 3.71 14 21 H 0.12 2.72 8.14 -2.39 -0.02 2.70 14 22 H 0.02 0.73 8.14 -2.38 -0.02 0.71 14 23 H 0.34 9.34 8.49 -89.69 -0.76 8.57 14 24 H 0.36 6.74 9.08 -89.69 -0.81 5.93 14 Total: -1.00 -66.07 214.43 1.20 -64.87 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.34 Total: 16.72 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 3.58 Total: 24.94 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -3.92 Total: -94.69 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -0.14 Total: -54.55 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -66.07 1.20 -64.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211742155.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.236 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds