Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31468 * 1 3 3 Si 1.86807 * 119.99800 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47250 * 119.99839 * 3 2 1 6 6 H 1.48501 * 109.46820 * 240.00067 * 3 2 1 7 7 C 1.38885 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00353 * 151.74678 * 7 2 1 9 9 N 1.37197 * 119.99512 * 331.75173 * 7 2 1 10 10 C 1.47091 * 125.55981 * 333.12192 * 9 7 2 11 11 C 1.54090 * 103.77868 * 179.87516 * 10 9 7 12 12 H 1.09001 * 110.42743 * 118.96424 * 11 10 9 13 13 C 1.53000 * 110.72960 * 241.64035 * 11 10 9 14 14 N 1.46903 * 109.47149 * 181.16376 * 13 11 10 15 15 O 1.45704 * 104.01281 * 0.37524 * 11 10 9 16 16 C 1.33798 * 109.47132 * 359.75572 * 15 11 10 17 17 O 1.21507 * 123.07539 * 179.97438 * 16 15 11 18 18 H 0.97002 * 119.99586 * 174.17366 * 1 2 3 19 19 H 1.08996 * 110.56491 * 298.58143 * 10 9 7 20 20 H 1.08997 * 110.56232 * 61.43113 * 10 9 7 21 21 H 1.08999 * 109.47149 * 301.16801 * 13 11 10 22 22 H 1.08997 * 109.47059 * 61.16992 * 13 11 10 23 23 H 1.00892 * 110.99985 * 179.97438 * 14 13 11 24 24 H 1.00898 * 111.00018 * 303.96349 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 1.2836 2.7465 -0.0006 5 1 3.1024 1.6966 1.2125 6 1 3.1024 1.6965 -1.2125 7 6 2.0092 -1.2027 0.0005 8 1 2.9927 -1.2586 -0.4422 9 7 1.4458 -2.3199 0.5634 10 6 0.4469 -2.3226 1.6431 11 6 0.1663 -3.8191 1.8797 12 1 0.4290 -4.0988 2.9000 13 6 -1.3012 -4.1464 1.5964 14 7 -1.5442 -5.5716 1.8569 15 8 1.0341 -4.4961 0.9250 16 6 1.7201 -3.5867 0.2231 17 8 2.5191 -3.8824 -0.6432 18 1 -0.4850 -0.8358 -0.0853 19 1 0.8539 -1.8604 2.5425 20 1 -0.4613 -1.8103 1.3258 21 1 -1.9392 -3.5447 2.2436 22 1 -1.5283 -3.9239 0.5538 23 1 -2.5073 -5.8128 1.6773 24 1 -0.9191 -6.1498 1.3157 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211742238.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = -94.839898 kcal Electronic energy + Delta-G solvation = -11739.363900 eV Core-core repulsion = 9459.035978 eV Total energy + Delta-G solvation = -2280.327922 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.47770 -38.24618 -37.11068 -35.49552 -33.66592 -30.84526 -27.34228 -25.45612 -23.37339 -22.50733 -20.11234 -18.31318 -17.66902 -17.63704 -16.54957 -15.99901 -15.89626 -15.50869 -15.17473 -14.51369 -14.18707 -13.56051 -13.26841 -12.95093 -12.66803 -12.03188 -11.89604 -11.67248 -11.55203 -11.00377 -10.09408 -9.80626 -8.90327 -6.26027 1.47984 1.56507 1.83479 1.88161 1.93636 2.44905 2.80568 3.01242 3.13803 3.62222 3.79833 3.91254 4.25801 4.40415 4.54776 4.74296 4.79045 5.70417 5.84374 5.99322 6.46973 6.50133 6.57824 7.11654 7.60703 8.34203 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.057331 B = 0.013495 C = 0.011573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.277738 B = 2074.313552 C = 2418.797332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C -0.015 4.015 3 Si 1.129 2.871 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.275 1.275 7 C -0.424 4.424 8 H 0.069 0.931 9 N -0.471 5.471 10 C 0.061 3.939 11 C 0.073 3.927 12 H 0.139 0.861 13 C 0.066 3.934 14 N -0.843 5.843 15 O -0.345 6.345 16 C 0.571 3.429 17 O -0.613 6.613 18 H 0.265 0.735 19 H 0.094 0.906 20 H 0.090 0.910 21 H 0.120 0.880 22 H 0.020 0.980 23 H 0.358 0.642 24 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 -2.054 6.642 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.219 4.219 3 Si 0.948 3.052 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.087 0.913 9 N -0.205 5.205 10 C -0.063 4.063 11 C 0.017 3.983 12 H 0.157 0.843 13 C -0.066 4.066 14 N -0.374 5.374 15 O -0.257 6.257 16 C 0.327 3.673 17 O -0.507 6.507 18 H 0.076 0.924 19 H 0.112 0.888 20 H 0.108 0.892 21 H 0.138 0.862 22 H 0.038 0.962 23 H 0.172 0.828 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.737 -0.636 7.045 8.513 hybrid contribution -0.028 -1.873 -1.388 2.332 sum -4.765 -2.509 5.656 7.810 Atomic orbital electron populations 1.70946 1.07555 1.30352 1.42199 1.27947 0.96065 1.05005 0.92912 0.82751 0.74184 0.69966 0.78333 1.19574 1.18940 1.20004 1.20149 1.02372 0.87671 1.44745 0.91325 1.43815 1.40222 1.03890 1.32606 1.22963 0.94801 0.96493 0.92073 1.24193 0.91179 0.89086 0.93840 0.84340 1.22038 0.92612 0.92043 0.99860 1.58708 1.10874 1.02935 1.64891 1.87096 1.54423 1.33418 1.50723 1.18914 0.84009 0.81720 0.82677 1.90780 1.40670 1.83102 1.36128 0.92392 0.88752 0.89238 0.86226 0.96185 0.82802 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.72 12.84 21.65 0.28 -46.44 14 2 C -0.02 -0.80 5.12 84.90 0.43 -0.36 14 3 Si 1.13 45.35 30.00 68.60 2.06 47.41 14 4 H -0.27 -10.52 7.11 99.48 0.71 -9.82 14 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 14 7 C -0.42 -24.17 9.55 84.01 0.80 -23.36 14 8 H 0.07 4.18 7.97 -2.91 -0.02 4.16 14 9 N -0.47 -24.93 2.85 -764.09 -2.18 -27.11 14 10 C 0.06 2.46 6.32 86.64 0.55 3.01 14 11 C 0.07 2.46 4.08 30.96 0.13 2.59 14 12 H 0.14 3.90 8.14 -2.39 -0.02 3.88 14 13 C 0.07 1.80 6.37 86.30 0.55 2.35 14 14 N -0.84 -19.84 9.62 -186.72 -1.80 -21.64 14 15 O -0.35 -15.38 10.43 -47.56 -0.50 -15.88 14 16 C 0.57 31.35 8.80 129.91 1.14 32.49 14 17 O -0.61 -38.67 17.64 19.66 0.35 -38.32 14 18 H 0.27 14.24 6.35 -92.71 -0.59 13.66 14 19 H 0.09 3.53 8.14 -2.39 -0.02 3.51 14 20 H 0.09 3.69 5.36 -2.39 -0.01 3.67 14 21 H 0.12 2.65 8.14 -2.39 -0.02 2.63 14 22 H 0.02 0.62 8.14 -2.39 -0.02 0.61 14 23 H 0.36 6.48 9.08 -89.70 -0.81 5.67 14 24 H 0.34 8.84 8.66 -89.70 -0.78 8.06 14 Total: -1.00 -70.02 214.95 1.64 -68.38 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.17 Total: 16.88 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 3.60 Total: 16.71 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -3.70 Total: -95.19 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.15 Total: -54.20 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.06 Total: 47.41 kcal Total: -70.02 1.64 -68.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211742238.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.464 kcal (2) G-P(sol) polarization free energy of solvation -70.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds