Wall clock time and date at job start Mon Mar 30 2020 01:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99671 * 3 2 1 5 5 H 1.48498 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99948 * 3 2 1 7 7 C 1.40261 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.40548 * 119.99908 * 0.28066 * 7 2 1 10 10 N 1.33296 * 127.03987 * 359.40411 * 9 7 2 11 11 N 1.28799 * 107.72045 * 179.89621 * 10 9 7 12 12 N 1.28579 * 110.10770 * 0.38186 * 11 10 9 13 13 N 1.29004 * 109.45409 * 359.76432 * 12 11 10 14 14 C 1.46500 * 126.59956 * 180.02562 * 13 12 11 15 15 C 1.52991 * 109.46984 * 269.96891 * 14 13 12 16 16 F 1.39904 * 109.47258 * 180.02562 * 15 14 13 17 17 H 0.96996 * 120.00314 * 0.02562 * 1 2 3 18 18 H 1.09006 * 109.47020 * 29.97262 * 14 13 12 19 19 H 1.08999 * 109.46706 * 149.96848 * 14 13 12 20 20 H 1.08997 * 109.47745 * 300.00218 * 15 14 13 21 21 H 1.08999 * 109.47435 * 60.00402 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0078 -1.2147 0.0005 8 1 3.0878 -1.2146 0.0001 9 6 1.3051 -2.4319 -0.0049 10 7 -0.0178 -2.5953 0.0003 11 7 -0.2565 -3.8610 -0.0099 12 7 0.8481 -4.5191 -0.0133 13 7 1.8398 -3.6940 -0.0104 14 6 3.2635 -4.0395 -0.0131 15 6 3.7604 -4.1656 1.4283 16 9 5.1201 -4.4950 1.4257 17 1 -0.4850 0.8400 -0.0004 18 1 3.4062 -4.9880 -0.5310 19 1 3.8259 -3.2582 -0.5244 20 1 3.6177 -3.2172 1.9462 21 1 3.1980 -4.9469 1.9395 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211953223.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:06 Heat of formation + Delta-G solvation = 22.460325 kcal Electronic energy + Delta-G solvation = -11149.595152 eV Core-core repulsion = 8783.186195 eV Total energy + Delta-G solvation = -2366.408956 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.061 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.74255 -43.67724 -36.24745 -35.84527 -32.48960 -31.02354 -28.25108 -25.12667 -23.65812 -22.33595 -19.51847 -18.20647 -17.33785 -17.21557 -16.85834 -16.07870 -15.55233 -15.27576 -14.43872 -13.74126 -13.12269 -12.99351 -12.86231 -12.74674 -12.21483 -12.01425 -11.82081 -11.51940 -11.03451 -10.93583 -10.32926 -8.66935 -6.90307 0.98131 1.45073 1.56544 1.61049 1.84715 2.16634 2.22713 3.12277 3.52941 3.59204 3.92291 4.17145 4.24009 4.64008 4.71943 4.93963 5.13469 5.69363 5.75078 6.08658 6.58186 6.61288 8.29733 8.67760 Molecular weight = 186.06amu Principal moments of inertia in cm(-1) A = 0.035890 B = 0.015936 C = 0.011418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.977234 B = 1756.606353 C = 2451.604223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.031 3.969 3 Si 1.009 2.991 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.450 4.450 8 H 0.120 0.880 9 C 0.298 3.702 10 N -0.396 5.396 11 N -0.131 5.131 12 N -0.190 5.190 13 N -0.395 5.395 14 C 0.108 3.892 15 C 0.062 3.938 16 F -0.208 7.208 17 H 0.292 0.708 18 H 0.114 0.886 19 H 0.118 0.882 20 H 0.083 0.917 21 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 1.352 1.164 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.193 4.193 3 Si 0.827 3.173 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.493 4.493 8 H 0.138 0.862 9 C 0.051 3.949 10 N -0.256 5.256 11 N -0.126 5.126 12 N -0.177 5.177 13 N -0.201 5.201 14 C -0.015 4.015 15 C 0.006 3.994 16 F -0.190 7.190 17 H 0.103 0.897 18 H 0.133 0.867 19 H 0.136 0.864 20 H 0.101 0.899 21 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.774 0.579 1.159 8.869 hybrid contribution 0.840 0.807 -0.036 1.165 sum 9.614 1.387 1.123 9.778 Atomic orbital electron populations 1.70018 1.09624 1.31200 1.29092 1.27108 0.95678 1.05039 0.91432 0.84841 0.78181 0.73499 0.80747 1.17450 1.19698 1.17340 1.19043 0.95609 0.86690 1.47913 0.86205 1.23098 0.88972 0.87556 0.95318 1.76110 1.11968 1.05684 1.31883 1.77837 1.18865 1.01020 1.14895 1.77991 0.91903 1.20447 1.27363 1.48234 1.07506 1.04396 1.59927 1.22244 0.75196 1.05369 0.98685 1.22119 0.76904 1.03255 0.97169 1.92761 1.34127 1.94510 1.97553 0.89678 0.86740 0.86361 0.89854 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.53 11.98 21.88 0.26 -40.27 14 2 C 0.03 1.45 5.50 85.36 0.47 1.92 14 3 Si 1.01 33.62 29.56 68.60 2.03 35.64 14 4 H -0.25 -7.86 7.11 99.48 0.71 -7.15 14 5 H -0.27 -8.92 7.11 99.48 0.71 -8.21 14 6 H -0.25 -7.79 7.11 99.48 0.71 -7.08 14 7 C -0.45 -21.62 9.06 23.33 0.21 -21.41 14 8 H 0.12 4.86 7.29 -2.91 -0.02 4.84 14 9 C 0.30 15.92 7.63 133.79 1.02 16.94 14 10 N -0.40 -23.83 10.71 -55.20 -0.59 -24.42 14 11 N -0.13 -7.60 13.38 37.02 0.50 -7.10 14 12 N -0.19 -9.78 13.25 37.02 0.49 -9.29 14 13 N -0.39 -18.30 3.42 -344.80 -1.18 -19.48 14 14 C 0.11 3.55 6.68 86.38 0.58 4.12 14 15 C 0.06 1.80 7.88 71.98 0.57 2.37 14 16 F -0.21 -5.76 17.36 44.97 0.78 -4.98 14 17 H 0.29 13.71 8.29 -92.71 -0.77 12.94 14 18 H 0.11 3.28 8.14 -2.38 -0.02 3.26 14 19 H 0.12 3.47 7.48 -2.39 -0.02 3.45 14 20 H 0.08 2.50 8.14 -2.39 -0.02 2.48 14 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 14 Total: -1.00 -65.47 205.23 6.39 -59.09 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.25 Total: 6.86 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 2.85 Total: 3.94 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -0.52 Total: -100.56 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.78 Total: -4.98 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.64 kcal Total: -65.47 6.39 -59.09 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211953223.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.548 kcal (2) G-P(sol) polarization free energy of solvation -65.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds