Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35330 * 117.00201 * 2 1 4 4 N 1.30865 * 127.21381 * 180.30881 * 3 2 1 5 5 C 1.32759 * 116.92195 * 180.18618 * 4 3 2 6 6 C 1.41173 * 121.53090 * 179.74717 * 5 4 3 7 7 H 1.08001 * 119.99625 * 6.23633 * 6 5 4 8 8 C 1.39885 * 120.00736 * 186.23598 * 6 5 4 9 9 N 1.30847 * 120.00634 * 183.68310 * 8 6 5 10 10 Si 1.86805 * 119.99528 * 3.95732 * 8 6 5 11 11 H 1.48505 * 109.47047 * 179.72519 * 10 8 6 12 12 H 1.48500 * 109.47042 * 299.72609 * 10 8 6 13 13 H 1.48497 * 109.47086 * 59.72654 * 10 8 6 14 14 N 1.32292 * 116.94432 * 359.48153 * 5 4 3 15 15 S 1.69894 * 105.68797 * 0.27230 * 14 5 4 16 16 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 17 17 H 1.09002 * 109.47268 * 299.99938 * 1 2 3 18 18 H 1.09000 * 109.47139 * 59.99590 * 1 2 3 19 19 H 0.96998 * 119.99694 * 355.16456 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3313 1.4378 -0.0056 5 6 3.7131 2.7093 -0.0005 6 6 5.0778 3.0704 -0.0005 7 1 5.8375 2.3101 -0.1063 8 6 5.4463 4.4129 0.1365 9 7 6.7069 4.7561 0.0644 10 14 4.1392 5.7147 0.4303 11 1 4.7848 7.0471 0.5460 12 1 3.1853 5.7241 -0.7078 13 1 3.4085 5.4080 1.6861 14 7 2.7560 3.6225 -0.0009 15 16 1.2944 2.7563 -0.0005 16 1 -0.3634 -1.0276 0.0005 17 1 -0.3634 0.5138 0.8900 18 1 -0.3633 0.5139 -0.8899 19 1 7.3916 4.0735 -0.0138 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213711302.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -19.127154 kcal Electronic energy + Delta-G solvation = -9205.835859 eV Core-core repulsion = 7235.710864 eV Total energy + Delta-G solvation = -1970.124994 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -40.88107 -39.56532 -35.70857 -32.55658 -29.12978 -28.40574 -24.97352 -21.88785 -20.06723 -19.85065 -18.21354 -17.40393 -16.22520 -15.94962 -15.31864 -15.06416 -14.63689 -13.36558 -13.14345 -12.98867 -12.66882 -12.31010 -11.79342 -11.41562 -11.00031 -10.53499 -10.05398 -9.88076 -9.56215 -7.10060 -0.11829 0.17047 1.01545 1.40756 1.51040 1.74536 2.02789 2.11096 2.58044 3.02939 4.04760 4.24087 4.25888 4.61856 4.99002 5.30044 5.49228 5.80411 5.90353 6.31542 7.13088 7.83610 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.080762 B = 0.014678 C = 0.012540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.615953 B = 1907.099344 C = 2232.341944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.280 6.280 3 C 0.291 3.709 4 N -0.586 5.586 5 C 0.374 3.626 6 C -0.468 4.468 7 H 0.075 0.925 8 C 0.031 3.969 9 N -0.809 5.809 10 Si 1.154 2.846 11 H -0.296 1.296 12 H -0.268 1.268 13 H -0.287 1.287 14 N -0.630 5.630 15 S 0.096 5.904 16 H 0.154 0.846 17 H 0.076 0.924 18 H 0.076 0.924 19 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.180 -4.918 0.333 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.185 6.185 3 C -0.036 4.036 4 N -0.326 5.326 5 C 0.121 3.879 6 C -0.514 4.514 7 H 0.093 0.907 8 C -0.189 4.189 9 N -0.434 5.434 10 Si 0.983 3.017 11 H -0.226 1.226 12 H -0.195 1.195 13 H -0.215 1.215 14 N -0.478 5.478 15 S 0.225 5.775 16 H 0.172 0.828 17 H 0.095 0.905 18 H 0.095 0.905 19 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.831 -2.657 0.469 13.112 hybrid contribution 1.281 -2.602 -0.226 2.909 sum -11.551 -5.259 0.244 12.694 Atomic orbital electron populations 1.23941 0.72659 1.07943 1.03859 1.85810 1.25269 1.20185 1.87206 1.26693 0.92050 0.91872 0.92980 1.67265 1.13541 1.22319 1.29436 1.20057 0.96048 0.81157 0.90614 1.20075 0.88764 0.96402 1.46117 0.90708 1.28254 1.01204 1.00688 0.88774 1.70674 1.01438 1.39095 1.32177 0.81995 0.70084 0.70524 0.79109 1.22634 1.19532 1.21516 1.77312 0.96262 1.21234 1.52998 1.83893 1.20300 0.95882 1.77413 0.82848 0.90492 0.90507 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.34 113.37 1.17 1.38 13 2 O -0.28 -9.41 10.55 -86.19 -0.91 -10.32 13 3 C 0.29 12.48 8.57 130.39 1.12 13.59 13 4 N -0.59 -30.90 10.60 -319.12 -3.38 -34.28 13 5 C 0.37 20.98 7.07 135.61 0.96 21.94 13 6 C -0.47 -27.28 9.85 23.39 0.23 -27.05 13 7 H 0.07 4.48 8.05 -2.91 -0.02 4.46 13 8 C 0.03 1.74 5.52 85.24 0.47 2.21 13 9 N -0.81 -44.59 13.66 21.82 0.30 -44.30 13 10 Si 1.15 56.79 25.68 68.60 1.76 58.55 13 11 H -0.30 -13.64 7.11 99.48 0.71 -12.94 13 12 H -0.27 -13.34 6.67 99.48 0.66 -12.67 13 13 H -0.29 -14.27 7.11 99.48 0.71 -13.56 13 14 N -0.63 -33.40 6.72 -62.43 -0.42 -33.82 13 15 S 0.10 3.99 22.77 -56.49 -1.29 2.71 13 16 H 0.15 1.72 8.14 -2.39 -0.02 1.70 13 17 H 0.08 1.35 8.10 -2.39 -0.02 1.33 13 18 H 0.08 1.35 8.10 -2.39 -0.02 1.33 13 19 H 0.29 15.27 8.72 -92.71 -0.81 14.46 13 Total: -1.00 -66.49 193.35 1.20 -65.29 By element: Atomic # 1 Polarization: -17.09 SS G_CDS: 1.19 Total: -15.90 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 3.95 Total: 12.08 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.50 Total: -112.40 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.91 Total: -10.32 kcal Atomic # 14 Polarization: 56.79 SS G_CDS: 1.76 Total: 58.55 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.29 Total: 2.71 kcal Total: -66.49 1.20 -65.29 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213711302.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.160 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds