Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47258 * 2 1 4 4 O 1.42971 * 109.47002 * 119.99931 * 2 1 3 5 5 C 1.43097 * 113.76663 * 178.79670 * 4 2 1 6 6 C 1.53255 * 108.94184 * 302.02877 * 5 4 2 7 7 C 1.50708 * 109.57653 * 174.33729 * 6 5 4 8 8 H 1.08002 * 119.99216 * 334.79864 * 7 6 5 9 9 C 1.37867 * 120.00210 * 154.80322 * 7 6 5 10 10 N 1.31514 * 120.00278 * 6.41235 * 9 7 6 11 11 Si 1.86804 * 120.00085 * 186.40979 * 9 7 6 12 12 H 1.48500 * 109.47150 * 179.97438 * 11 9 7 13 13 H 1.48499 * 109.46889 * 300.00064 * 11 9 7 14 14 H 1.48502 * 109.46544 * 60.00075 * 11 9 7 15 15 C 1.53264 * 108.84878 * 54.52570 * 6 5 4 16 16 O 1.42968 * 109.47237 * 239.99801 * 2 1 3 17 17 H 1.09002 * 109.47057 * 299.99586 * 1 2 3 18 18 H 1.08997 * 109.47398 * 60.00335 * 1 2 3 19 19 H 1.09008 * 109.47283 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47168 * 180.02562 * 3 2 1 21 21 H 1.08997 * 109.46643 * 300.00128 * 3 2 1 22 22 H 1.08996 * 109.46613 * 59.99820 * 3 2 1 23 23 H 1.09000 * 109.55363 * 182.19370 * 5 4 2 24 24 H 1.08997 * 109.56054 * 61.87013 * 5 4 2 25 25 H 1.09010 * 109.57605 * 294.58941 * 6 5 4 26 26 H 0.97003 * 120.00172 * 355.08037 * 10 9 7 27 27 H 1.09003 * 109.55402 * 65.31274 * 15 6 5 28 28 H 1.09002 * 109.56113 * 185.63836 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 1.1674 5 6 3.4332 -0.7514 1.2465 6 6 3.9624 -1.4691 0.0001 7 6 5.4691 -1.4364 0.0001 8 1 5.9921 -0.6537 0.5296 9 6 6.1796 -2.4053 -0.6759 10 7 5.5472 -3.2832 -1.4236 11 14 8.0408 -2.4713 -0.5299 12 1 8.5618 -3.5969 -1.3466 13 1 8.6212 -1.1946 -1.0182 14 1 8.4187 -2.6754 0.8916 15 6 3.4332 -0.7515 -1.2465 16 8 2.0065 -0.6740 -1.1673 17 1 -0.3633 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 3.1300 1.4425 -0.0005 21 1 1.6766 1.9563 -0.8900 22 1 1.6766 1.9563 0.8900 23 1 3.7193 -1.3096 2.1380 24 1 3.8512 0.2541 1.2938 25 1 3.6196 -2.5038 0.0012 26 1 4.5775 -3.2942 -1.4435 27 1 3.8512 0.2541 -1.2937 28 1 3.7194 -1.3096 -2.1380 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213711391.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = -111.277337 kcal Electronic energy + Delta-G solvation = -12185.860871 eV Core-core repulsion = 10008.360512 eV Total energy + Delta-G solvation = -2177.500359 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.51330 -34.84538 -34.28749 -31.78007 -29.54562 -27.16406 -24.95826 -24.21222 -21.54804 -19.03611 -17.00070 -16.81008 -15.48466 -14.92018 -14.05250 -13.86881 -13.70582 -12.94869 -12.39677 -12.29381 -11.89742 -11.84263 -11.57449 -11.45866 -10.90939 -10.86855 -10.23403 -10.11529 -10.04588 -9.08262 -8.70808 -8.67554 -8.32163 -6.48198 -4.21219 3.38289 3.40166 3.59209 4.29228 4.39150 4.50694 5.17522 5.25101 5.30748 5.75775 5.88836 5.91990 5.95839 6.06117 6.11755 6.24942 6.33908 6.38049 6.53520 6.78542 7.13885 7.25035 7.54863 7.99957 8.16661 8.30091 8.74637 9.52926 10.91366 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.077543 B = 0.011528 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.001053 B = 2428.255105 C = 2514.212965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.268 3.732 3 C -0.204 4.204 4 O -0.404 6.404 5 C 0.068 3.932 6 C -0.027 4.027 7 C -0.603 4.603 8 H 0.052 0.948 9 C 0.023 3.977 10 N -0.904 5.904 11 Si 1.070 2.930 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.061 3.939 16 O -0.405 6.405 17 H 0.071 0.929 18 H 0.071 0.929 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.273 0.727 27 H 0.040 0.960 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 6.825 2.483 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.190 3.810 3 C -0.262 4.262 4 O -0.325 6.325 5 C -0.008 4.008 6 C -0.046 4.046 7 C -0.641 4.641 8 H 0.071 0.929 9 C -0.182 4.182 10 N -0.539 5.539 11 Si 0.898 3.102 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.213 1.213 15 C -0.015 4.015 16 O -0.327 6.327 17 H 0.090 0.910 18 H 0.090 0.910 19 H 0.087 0.913 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.329 5.876 1.920 7.547 hybrid contribution -0.859 1.070 0.550 1.478 sum -5.188 6.946 2.470 9.014 Atomic orbital electron populations 1.21559 0.91087 1.03366 1.02205 1.22428 0.93475 0.87716 0.77348 1.22812 1.03256 0.97567 1.02526 1.87985 1.23557 1.78367 1.42628 1.22858 0.78100 0.99294 1.00531 1.19963 0.97221 0.96600 0.90858 1.21759 0.89840 1.14548 1.37930 0.92942 1.25917 1.07201 0.92774 0.92323 1.70798 1.11298 1.37056 1.34748 0.83524 0.73986 0.76329 0.76368 1.20654 1.21375 1.21274 1.23228 0.77094 0.99452 1.01738 1.87996 1.24349 1.78134 1.42183 0.91046 0.90966 0.91316 0.91220 0.91367 0.91457 0.89653 0.94062 0.93578 0.91576 0.94159 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.21 37.16 0.34 -1.57 15 2 C 0.27 5.19 1.50 -26.73 -0.04 5.15 15 3 C -0.20 -3.41 8.11 37.16 0.30 -3.10 15 4 O -0.40 -8.74 10.35 -59.03 -0.61 -9.35 15 5 C 0.07 1.53 5.87 37.29 0.22 1.75 15 6 C -0.03 -0.70 2.12 -91.50 -0.19 -0.89 15 7 C -0.60 -16.60 8.33 -34.44 -0.29 -16.89 15 8 H 0.05 1.42 7.82 -52.49 -0.41 1.01 15 9 C 0.02 0.66 5.45 -17.82 -0.10 0.56 15 10 N -0.90 -26.98 13.63 55.43 0.76 -26.23 15 11 Si 1.07 24.57 29.91 -169.99 -5.08 19.49 15 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 13 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 14 H -0.29 -6.28 7.11 56.52 0.40 -5.88 15 15 C 0.06 1.46 5.81 37.29 0.22 1.68 15 16 O -0.41 -9.13 10.35 -59.03 -0.61 -9.75 15 17 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 18 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 19 H 0.07 1.07 8.14 -51.92 -0.42 0.65 15 20 H 0.07 1.27 5.11 -51.93 -0.27 1.00 15 21 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.04 0.88 6.53 -51.93 -0.34 0.55 15 25 H 0.05 1.31 6.96 -51.92 -0.36 0.95 15 26 H 0.27 8.20 6.32 -40.82 -0.26 7.94 15 27 H 0.04 0.93 6.53 -51.93 -0.34 0.59 15 28 H 0.09 2.23 7.72 -51.93 -0.40 1.83 15 LS Contribution 227.80 15.07 3.43 3.43 Total: -1.00 -30.05 227.80 -5.36 -35.42 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.71 Total: 0.30 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 0.46 Total: -13.32 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.76 Total: -26.23 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.22 Total: -19.10 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.05 -5.36 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213711391.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.861 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds