Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47258 * 2 1 4 4 O 1.42971 * 109.47002 * 119.99931 * 2 1 3 5 5 C 1.43097 * 113.76663 * 178.79670 * 4 2 1 6 6 C 1.53255 * 108.94184 * 302.02877 * 5 4 2 7 7 C 1.50708 * 109.57653 * 174.33729 * 6 5 4 8 8 H 1.08002 * 119.99216 * 334.79864 * 7 6 5 9 9 C 1.37867 * 120.00210 * 154.80322 * 7 6 5 10 10 N 1.31514 * 120.00278 * 6.41235 * 9 7 6 11 11 Si 1.86804 * 120.00085 * 186.40979 * 9 7 6 12 12 H 1.48500 * 109.47150 * 179.97438 * 11 9 7 13 13 H 1.48499 * 109.46889 * 300.00064 * 11 9 7 14 14 H 1.48502 * 109.46544 * 60.00075 * 11 9 7 15 15 C 1.53264 * 108.84878 * 54.52570 * 6 5 4 16 16 O 1.42968 * 109.47237 * 239.99801 * 2 1 3 17 17 H 1.09002 * 109.47057 * 299.99586 * 1 2 3 18 18 H 1.08997 * 109.47398 * 60.00335 * 1 2 3 19 19 H 1.09008 * 109.47283 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47168 * 180.02562 * 3 2 1 21 21 H 1.08997 * 109.46643 * 300.00128 * 3 2 1 22 22 H 1.08996 * 109.46613 * 59.99820 * 3 2 1 23 23 H 1.09000 * 109.55363 * 182.19370 * 5 4 2 24 24 H 1.08997 * 109.56054 * 61.87013 * 5 4 2 25 25 H 1.09010 * 109.57605 * 294.58941 * 6 5 4 26 26 H 0.97003 * 120.00172 * 355.08037 * 10 9 7 27 27 H 1.09003 * 109.55402 * 65.31274 * 15 6 5 28 28 H 1.09002 * 109.56113 * 185.63836 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 1.1674 5 6 3.4332 -0.7514 1.2465 6 6 3.9624 -1.4691 0.0001 7 6 5.4691 -1.4364 0.0001 8 1 5.9921 -0.6537 0.5296 9 6 6.1796 -2.4053 -0.6759 10 7 5.5472 -3.2832 -1.4236 11 14 8.0408 -2.4713 -0.5299 12 1 8.5618 -3.5969 -1.3466 13 1 8.6212 -1.1946 -1.0182 14 1 8.4187 -2.6754 0.8916 15 6 3.4332 -0.7515 -1.2465 16 8 2.0065 -0.6740 -1.1673 17 1 -0.3633 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 3.1300 1.4425 -0.0005 21 1 1.6766 1.9563 -0.8900 22 1 1.6766 1.9563 0.8900 23 1 3.7193 -1.3096 2.1380 24 1 3.8512 0.2541 1.2938 25 1 3.6196 -2.5038 0.0012 26 1 4.5775 -3.2942 -1.4435 27 1 3.8512 0.2541 -1.2937 28 1 3.7194 -1.3096 -2.1380 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213711391.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = -131.183446 kcal Electronic energy + Delta-G solvation = -12186.724065 eV Core-core repulsion = 10008.360512 eV Total energy + Delta-G solvation = -2178.363553 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.22317 -36.60775 -36.26005 -33.50363 -31.34773 -28.49878 -26.83291 -26.26062 -23.30037 -20.81839 -19.04891 -18.50144 -17.12914 -16.65603 -15.88849 -15.75880 -15.48340 -14.72011 -14.19052 -13.60051 -13.51831 -13.22405 -13.10752 -13.05656 -12.67725 -12.58303 -12.00407 -11.89380 -11.86207 -10.99739 -10.74864 -10.54091 -10.31276 -8.71800 -6.45340 1.53903 1.61386 1.80952 2.53178 2.64996 2.86911 3.12354 3.77226 3.92006 4.04690 4.20411 4.41767 4.44233 4.60732 4.66402 4.71578 4.73366 4.79845 4.95494 5.20104 5.22402 5.31586 5.63536 6.08975 6.14204 6.30727 6.51804 7.37828 8.67505 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.077543 B = 0.011528 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.001053 B = 2428.255105 C = 2514.212965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.245 3.755 3 C -0.197 4.197 4 O -0.412 6.412 5 C 0.076 3.924 6 C -0.032 4.032 7 C -0.611 4.611 8 H 0.058 0.942 9 C -0.028 4.028 10 N -0.931 5.931 11 Si 1.119 2.881 12 H -0.286 1.286 13 H -0.267 1.267 14 H -0.268 1.268 15 C 0.075 3.925 16 O -0.418 6.418 17 H 0.098 0.902 18 H 0.094 0.906 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.006 0.994 26 H 0.257 0.743 27 H 0.051 0.949 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 8.517 3.206 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.169 3.831 3 C -0.255 4.255 4 O -0.333 6.333 5 C 0.000 4.000 6 C -0.052 4.052 7 C -0.649 4.649 8 H 0.076 0.924 9 C -0.227 4.227 10 N -0.568 5.568 11 Si 0.940 3.060 12 H -0.212 1.212 13 H -0.192 1.192 14 H -0.193 1.193 15 C -0.001 4.001 16 O -0.340 6.340 17 H 0.117 0.883 18 H 0.113 0.887 19 H 0.078 0.922 20 H 0.069 0.931 21 H 0.106 0.894 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.408 7.592 2.657 9.172 hybrid contribution -0.961 0.573 0.346 1.171 sum -5.369 8.165 3.003 10.223 Atomic orbital electron populations 1.21658 0.87822 1.03632 1.04702 1.23242 0.95847 0.88638 0.75387 1.22768 1.01994 0.95828 1.04880 1.87978 1.22610 1.79077 1.43679 1.22663 0.78950 0.99595 0.98771 1.19957 0.96776 0.95047 0.93387 1.22091 0.90932 1.14510 1.37352 0.92352 1.27437 1.11511 0.92208 0.91525 1.70927 1.10377 1.38652 1.36794 0.82909 0.68811 0.76982 0.77294 1.21182 1.19199 1.19323 1.22827 0.78430 0.99185 0.99707 1.87978 1.22948 1.79098 1.43994 0.88282 0.88708 0.92249 0.93070 0.89357 0.88814 0.89525 0.92518 0.97570 0.93290 0.93075 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.21 71.98 0.66 -2.69 15 2 C 0.24 9.02 1.50 30.60 0.05 9.07 15 3 C -0.20 -5.98 8.11 71.98 0.58 -5.39 15 4 O -0.41 -17.29 10.35 -126.22 -1.31 -18.60 15 5 C 0.08 3.38 5.87 72.07 0.42 3.80 15 6 C -0.03 -1.69 2.12 -11.36 -0.02 -1.71 15 7 C -0.61 -33.75 8.33 25.60 0.21 -33.54 15 8 H 0.06 3.10 7.82 -2.91 -0.02 3.07 15 9 C -0.03 -1.57 5.45 84.65 0.46 -1.11 15 10 N -0.93 -57.05 13.63 21.44 0.29 -56.76 15 11 Si 1.12 48.87 29.91 68.60 2.05 50.93 15 12 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 13 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 14 H -0.27 -10.84 7.11 99.48 0.71 -10.14 15 15 C 0.07 3.65 5.81 72.07 0.42 4.07 15 16 O -0.42 -18.72 10.35 -126.22 -1.31 -20.02 15 17 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 18 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 19 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 20 H 0.05 1.74 5.11 -2.39 -0.01 1.72 15 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.09 3.76 8.14 -2.39 -0.02 3.74 15 24 H 0.06 2.34 6.53 -2.39 -0.02 2.32 15 25 H 0.01 0.36 6.96 -2.38 -0.02 0.34 15 26 H 0.26 16.18 6.32 -92.71 -0.59 15.59 15 27 H 0.05 2.35 6.53 -2.39 -0.02 2.34 15 28 H 0.06 3.23 7.72 -2.39 -0.02 3.21 15 Total: -1.00 -64.86 227.80 3.83 -61.03 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.32 Total: 10.94 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 2.78 Total: -27.51 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.29 Total: -56.76 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -2.61 Total: -38.62 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.05 Total: 50.93 kcal Total: -64.86 3.83 -61.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213711391.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.156 kcal (2) G-P(sol) polarization free energy of solvation -64.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds