Wall clock time and date at job start Mon Mar 30 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48501 * 109.47449 * 270.00079 * 3 2 1 5 5 H 1.48501 * 109.47067 * 30.00434 * 3 2 1 6 6 H 1.48501 * 109.47042 * 150.00401 * 3 2 1 7 7 C 1.37873 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47522 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47179 * 300.00021 * 11 10 9 13 13 C 1.53006 * 109.46811 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.46814 * 65.00306 * 13 12 11 15 15 C 1.52999 * 109.47251 * 60.00224 * 12 11 10 16 16 C 1.52996 * 109.46846 * 299.99980 * 15 12 11 17 17 H 0.97001 * 119.99941 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47326 * 59.99593 * 9 7 2 19 19 H 1.09001 * 109.46843 * 59.99761 * 10 9 7 20 20 H 1.08998 * 109.46646 * 300.00047 * 10 9 7 21 21 H 1.09009 * 109.47102 * 179.97438 * 11 10 9 22 22 H 1.09001 * 109.47165 * 60.00267 * 11 10 9 23 23 H 1.08997 * 109.46828 * 299.99992 * 12 11 10 24 24 H 1.09001 * 109.47002 * 184.99763 * 13 12 11 25 25 H 1.08993 * 109.46955 * 305.00200 * 13 12 11 26 26 H 1.09001 * 109.47018 * 59.99799 * 15 12 11 27 27 H 1.08995 * 109.47070 * 180.02562 * 15 12 11 28 28 H 1.09001 * 109.47165 * 299.99729 * 16 15 12 29 29 H 1.09001 * 109.47244 * 180.02562 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 6 0.6010 -5.0677 1.2497 13 6 -0.1635 -6.3931 1.2505 14 9 0.7417 -7.4535 1.3658 15 6 -0.3932 -3.9048 1.2497 16 6 0.3718 -2.5799 1.2490 17 1 -0.4850 0.8401 0.0004 18 1 0.6240 -2.5567 -0.8902 19 1 2.8719 -3.6043 0.8894 20 1 2.8719 -3.6043 -0.8905 21 1 2.1886 -5.8156 -0.0003 22 1 0.8533 -5.0451 -0.8897 23 1 1.2280 -5.0097 2.1394 24 1 -0.8554 -6.4128 2.0926 25 1 -0.7215 -6.4912 0.3194 26 1 -1.0202 -3.9628 0.3599 27 1 -1.0192 -3.9621 2.1401 28 1 0.9987 -2.5218 2.1388 29 1 -0.3365 -1.7513 1.2495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213713691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:19 Heat of formation + Delta-G solvation = -90.480865 kcal Electronic energy + Delta-G solvation = -11713.073703 eV Core-core repulsion = 9548.847936 eV Total energy + Delta-G solvation = -2164.225767 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.31907 -37.69825 -33.19685 -30.70210 -29.60135 -26.31075 -23.55828 -21.58036 -20.31257 -18.80734 -16.31068 -15.59486 -15.37388 -14.99669 -14.49814 -13.54394 -13.13814 -12.72384 -12.48904 -11.82707 -11.48229 -11.22574 -10.96980 -10.86519 -10.59523 -10.22453 -10.17193 -9.98662 -9.79033 -9.33413 -8.83656 -8.62243 -8.26560 -5.95524 -4.01397 3.31834 3.38542 3.42127 4.46062 4.98245 5.08129 5.20923 5.34253 5.40551 5.69432 5.96299 6.05863 6.24917 6.37842 6.42519 6.53448 6.63280 6.74382 6.82866 6.99332 7.17613 7.28728 7.54572 7.78163 8.05668 8.18417 8.51077 9.02957 9.63159 11.10079 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.089565 B = 0.009654 C = 0.009056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.547765 B = 2899.716289 C = 3091.128327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.108 4.108 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.063 3.937 14 F -0.225 7.225 15 C -0.111 4.111 16 C -0.109 4.109 17 H 0.259 0.741 18 H 0.024 0.976 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 -8.084 1.981 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.135 4.135 13 C 0.008 3.992 14 F -0.207 7.207 15 C -0.148 4.148 16 C -0.147 4.147 17 H 0.069 0.931 18 H 0.042 0.958 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.107 -7.981 1.985 8.298 hybrid contribution 0.459 0.892 0.030 1.004 sum -0.648 -7.089 2.015 7.398 Atomic orbital electron populations 1.69874 1.05854 1.26250 1.51157 1.24967 0.94839 0.98984 0.95252 0.86645 0.79916 0.83689 0.78043 1.20770 1.21298 1.19989 1.21261 0.92906 0.90840 1.50021 0.92833 1.18661 0.92671 0.91526 0.94218 1.21617 0.98618 0.94271 1.00077 1.21576 0.98197 0.98659 0.96420 1.21781 0.98138 0.93428 1.00131 1.22190 0.90321 0.84149 1.02540 1.92715 1.70761 1.59495 1.97705 1.21599 0.97042 0.96008 1.00193 1.21600 0.99584 0.94649 0.98843 0.93125 0.95759 0.93471 0.93487 0.93249 0.92649 0.90793 0.91400 0.91187 0.92652 0.93710 0.94807 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 11.32 55.43 0.63 -24.81 15 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 15 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.05 1.18 2.10 -91.77 -0.19 0.99 15 10 C -0.11 -2.30 5.14 -26.73 -0.14 -2.43 15 11 C -0.11 -2.00 5.12 -26.73 -0.14 -2.14 15 12 C -0.12 -1.96 2.49 -90.62 -0.23 -2.19 15 13 C 0.06 0.89 6.91 37.16 0.26 1.15 15 14 F -0.23 -3.59 17.04 2.25 0.04 -3.55 15 15 C -0.11 -2.06 5.21 -26.73 -0.14 -2.20 15 16 C -0.11 -2.53 4.98 -26.73 -0.13 -2.66 15 17 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 18 H 0.02 0.66 8.14 -51.93 -0.42 0.23 15 19 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.05 0.83 7.94 -51.92 -0.41 0.42 15 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 15 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 29 H 0.09 2.41 6.07 -51.93 -0.32 2.10 15 LS Contribution 236.50 15.07 3.56 3.56 Total: -1.00 -28.06 236.50 -6.38 -34.44 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.50 Total: -3.62 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.10 Total: -22.35 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.63 Total: -24.81 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.06 -6.38 -34.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213713691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.039 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds