Wall clock time and date at job start Mon Mar 30 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48501 * 109.47449 * 270.00079 * 3 2 1 5 5 H 1.48501 * 109.47067 * 30.00434 * 3 2 1 6 6 H 1.48501 * 109.47042 * 150.00401 * 3 2 1 7 7 C 1.37873 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47522 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47179 * 300.00021 * 11 10 9 13 13 C 1.53006 * 109.46811 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.46814 * 65.00306 * 13 12 11 15 15 C 1.52999 * 109.47251 * 60.00224 * 12 11 10 16 16 C 1.52996 * 109.46846 * 299.99980 * 15 12 11 17 17 H 0.97001 * 119.99941 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47326 * 59.99593 * 9 7 2 19 19 H 1.09001 * 109.46843 * 59.99761 * 10 9 7 20 20 H 1.08998 * 109.46646 * 300.00047 * 10 9 7 21 21 H 1.09009 * 109.47102 * 179.97438 * 11 10 9 22 22 H 1.09001 * 109.47165 * 60.00267 * 11 10 9 23 23 H 1.08997 * 109.46828 * 299.99992 * 12 11 10 24 24 H 1.09001 * 109.47002 * 184.99763 * 13 12 11 25 25 H 1.08993 * 109.46955 * 305.00200 * 13 12 11 26 26 H 1.09001 * 109.47018 * 59.99799 * 15 12 11 27 27 H 1.08995 * 109.47070 * 180.02562 * 15 12 11 28 28 H 1.09001 * 109.47165 * 299.99729 * 16 15 12 29 29 H 1.09001 * 109.47244 * 180.02562 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 6 0.6010 -5.0677 1.2497 13 6 -0.1635 -6.3931 1.2505 14 9 0.7417 -7.4535 1.3658 15 6 -0.3932 -3.9048 1.2497 16 6 0.3718 -2.5799 1.2490 17 1 -0.4850 0.8401 0.0004 18 1 0.6240 -2.5567 -0.8902 19 1 2.8719 -3.6043 0.8894 20 1 2.8719 -3.6043 -0.8905 21 1 2.1886 -5.8156 -0.0003 22 1 0.8533 -5.0451 -0.8897 23 1 1.2280 -5.0097 2.1394 24 1 -0.8554 -6.4128 2.0926 25 1 -0.7215 -6.4912 0.3194 26 1 -1.0202 -3.9628 0.3599 27 1 -1.0192 -3.9621 2.1401 28 1 0.9987 -2.5218 2.1388 29 1 -0.3365 -1.7513 1.2495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213713691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:19 Heat of formation + Delta-G solvation = -105.299573 kcal Electronic energy + Delta-G solvation = -11713.716290 eV Core-core repulsion = 9548.847936 eV Total energy + Delta-G solvation = -2164.868354 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.48405 -39.33727 -35.12224 -32.46007 -31.27188 -28.02428 -25.27388 -23.23345 -21.88236 -20.48729 -18.39489 -16.88694 -16.59078 -16.54913 -16.19181 -15.07474 -14.77571 -14.58324 -14.14397 -13.53262 -13.19628 -12.86909 -12.76948 -12.43263 -12.40294 -11.86758 -11.65069 -11.59219 -11.50995 -11.15558 -10.67378 -10.47571 -10.32265 -8.07070 -6.20932 1.40532 1.41422 1.51489 2.43873 3.18929 3.70017 3.83356 3.96484 4.19016 4.38976 4.52022 4.61988 4.75628 4.83622 4.88805 4.94109 5.07909 5.14208 5.20930 5.41798 5.46609 5.48178 5.63750 5.72657 6.05767 6.22701 6.43595 6.91585 7.46945 8.96663 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.089565 B = 0.009654 C = 0.009056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.547765 B = 2899.716289 C = 3091.128327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.043 3.957 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.113 4.113 13 C 0.068 3.932 14 F -0.233 7.233 15 C -0.102 4.102 16 C -0.104 4.104 17 H 0.260 0.740 18 H -0.006 1.006 19 H 0.043 0.957 20 H 0.043 0.957 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -8.984 2.400 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.141 4.141 11 C -0.144 4.144 12 C -0.131 4.131 13 C 0.013 3.987 14 F -0.215 7.215 15 C -0.140 4.140 16 C -0.142 4.142 17 H 0.069 0.931 18 H 0.013 0.987 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.158 -8.891 2.403 9.283 hybrid contribution 0.487 1.199 -0.117 1.300 sum -0.670 -7.692 2.286 8.052 Atomic orbital electron populations 1.70006 1.07043 1.27008 1.51518 1.25714 0.95699 1.02230 0.94913 0.85665 0.78774 0.79682 0.78188 1.20221 1.20754 1.19507 1.21655 0.92945 0.92632 1.50362 0.93449 1.18650 0.93139 0.92076 0.93641 1.21502 0.97995 0.94853 0.99732 1.21527 0.98493 0.96977 0.97381 1.21702 0.97705 0.94486 0.99248 1.22192 0.89859 0.81930 1.04705 1.92705 1.71257 1.59678 1.97838 1.21456 0.97117 0.94000 1.01378 1.21411 0.98837 0.96458 0.97513 0.93074 0.98742 0.93784 0.93865 0.91612 0.92319 0.91079 0.88749 0.89544 0.92655 0.91313 0.95666 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 11.32 21.45 0.24 -52.90 15 2 C 0.01 0.72 5.30 84.65 0.45 1.17 15 3 Si 0.95 44.08 29.54 68.60 2.03 46.10 15 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 7 C -0.54 -30.28 8.56 25.60 0.22 -30.07 15 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 15 9 C 0.04 2.19 2.10 -11.54 -0.02 2.17 15 10 C -0.10 -4.35 5.14 30.59 0.16 -4.19 15 11 C -0.11 -3.64 5.12 30.59 0.16 -3.49 15 12 C -0.11 -3.53 2.49 -10.79 -0.03 -3.56 15 13 C 0.07 1.67 6.91 71.98 0.50 2.17 15 14 F -0.23 -6.64 17.04 44.97 0.77 -5.87 15 15 C -0.10 -3.62 5.21 30.59 0.16 -3.46 15 16 C -0.10 -4.87 4.98 30.59 0.15 -4.72 15 17 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 18 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 15 19 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 20 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.07 2.06 7.94 -2.38 -0.02 2.04 15 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 28 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 29 H 0.06 3.19 6.07 -2.39 -0.01 3.18 15 Total: -1.00 -60.04 236.50 5.87 -54.17 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.10 Total: 2.47 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 1.74 Total: -43.98 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.24 Total: -52.90 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.77 Total: -5.87 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -60.04 5.87 -54.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213713691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.130 kcal (2) G-P(sol) polarization free energy of solvation -60.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds