Wall clock time and date at job start Mon Mar 30 2020 02:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 F 1.39905 * 109.47070 * 64.99627 * 10 9 7 12 12 C 1.53004 * 109.46596 * 304.99972 * 10 9 7 13 13 C 1.53004 * 109.46756 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47188 * 60.00040 * 13 12 10 15 15 C 1.52995 * 109.47038 * 300.00050 * 14 13 12 16 16 C 1.52996 * 109.47619 * 59.99932 * 15 14 13 17 17 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 19 19 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 20 20 H 1.08992 * 109.47354 * 299.99424 * 12 10 9 21 21 H 1.09003 * 109.47270 * 60.00345 * 12 10 9 22 22 H 1.08997 * 109.47613 * 299.99889 * 13 12 10 23 23 H 1.08998 * 109.47102 * 180.02562 * 13 12 10 24 24 H 1.09001 * 109.47453 * 179.97438 * 14 13 12 25 25 H 1.09006 * 109.46848 * 59.99717 * 14 13 12 26 26 H 1.09000 * 109.47474 * 299.99615 * 15 14 13 27 27 H 1.09003 * 109.47515 * 179.97438 * 15 14 13 28 28 H 1.08998 * 109.47549 * 179.97438 * 16 15 14 29 29 H 1.09006 * 109.47227 * 59.99744 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 9 2.9718 -3.6544 1.1949 12 6 3.2053 -3.5121 -1.1822 13 6 4.1998 -4.6748 -1.1819 14 6 3.4394 -5.9965 -1.3073 15 6 2.4791 -6.1464 -0.1257 16 6 1.4846 -4.9839 -0.1259 17 1 -0.4850 0.8401 0.0004 18 1 0.6246 -2.5570 0.8898 19 1 0.6239 -2.5567 -0.8903 20 1 2.6391 -3.5182 -2.1135 21 1 3.7474 -2.5707 -1.0926 22 1 4.7661 -4.6684 -0.2506 23 1 4.8842 -4.5677 -2.0234 24 1 4.1479 -6.8248 -1.3075 25 1 2.8732 -6.0029 -2.2387 26 1 3.0453 -6.1400 0.8057 27 1 1.9370 -7.0878 -0.2152 28 1 0.8002 -5.0909 0.7156 29 1 0.9183 -4.9903 -1.0574 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213713774.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:17 Heat of formation + Delta-G solvation = -86.695977 kcal Electronic energy + Delta-G solvation = -11942.885338 eV Core-core repulsion = 9778.823696 eV Total energy + Delta-G solvation = -2164.061642 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.53915 -37.24483 -33.29582 -30.90223 -30.38179 -26.73552 -23.39543 -22.14463 -20.38565 -18.89493 -16.31382 -15.41197 -14.72187 -14.45864 -14.22127 -13.57515 -13.02119 -12.90118 -12.14304 -11.83199 -11.63781 -11.33187 -11.11014 -10.97237 -10.68465 -10.56201 -10.47247 -10.23776 -9.96250 -9.65420 -8.90898 -8.80313 -8.37403 -6.00520 -4.01915 3.34812 3.38739 3.42037 4.46358 5.14272 5.16807 5.18319 5.35598 5.61984 5.67673 5.80998 5.94239 5.97339 6.02970 6.04282 6.30308 6.36971 6.51149 6.58931 6.65792 6.77502 6.99343 7.05650 7.56879 7.73707 7.96485 8.36327 9.01649 9.61060 11.11092 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.064561 B = 0.011576 C = 0.010815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.593402 B = 2418.206786 C = 2588.354376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.005 3.995 10 C 0.125 3.875 11 F -0.218 7.218 12 C -0.128 4.128 13 C -0.123 4.123 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.139 4.139 17 H 0.261 0.739 18 H 0.025 0.975 19 H 0.031 0.969 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -9.085 -2.486 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.032 4.032 10 C 0.107 3.893 11 F -0.198 7.198 12 C -0.165 4.165 13 C -0.161 4.161 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.177 4.177 17 H 0.071 0.929 18 H 0.044 0.956 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.101 0.899 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.645 -8.964 -2.457 10.391 hybrid contribution 0.382 0.977 0.085 1.052 sum 5.028 -7.987 -2.372 9.732 Atomic orbital electron populations 1.69955 1.06058 1.26767 1.50839 1.24997 0.94839 0.99250 0.95306 0.86635 0.79574 0.83024 0.78687 1.21306 1.20177 1.20208 1.21131 0.93101 0.90516 1.50520 0.92186 1.19657 0.93735 0.91328 0.98485 1.21063 0.91654 0.96237 0.80367 1.92722 1.79955 1.97685 1.49485 1.22016 0.97455 0.98803 0.98272 1.21586 0.98160 0.94858 1.01488 1.21532 0.98121 0.97372 0.98445 1.21511 0.97533 0.97759 0.98883 1.22138 0.98179 0.94626 1.02715 0.92927 0.95636 0.95086 0.91210 0.89921 0.91957 0.92523 0.92729 0.92268 0.91826 0.92539 0.91575 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.26 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 15 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 7 C -0.51 -14.59 8.22 -34.44 -0.28 -14.88 15 8 H 0.06 1.67 6.36 -52.49 -0.33 1.34 15 9 C 0.01 0.13 4.34 -27.89 -0.12 0.01 15 10 C 0.12 2.68 0.87 -90.62 -0.08 2.60 15 11 F -0.22 -5.06 15.59 2.25 0.04 -5.03 15 12 C -0.13 -2.47 4.67 -26.73 -0.12 -2.60 15 13 C -0.12 -1.96 5.80 -26.73 -0.16 -2.11 15 14 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 15 15 C -0.12 -1.79 5.80 -26.74 -0.16 -1.95 15 16 C -0.14 -2.47 5.00 -26.73 -0.13 -2.60 15 17 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 18 H 0.03 0.72 8.14 -51.93 -0.42 0.29 15 19 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 20 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 21 H 0.08 1.75 6.32 -51.93 -0.33 1.42 15 22 H 0.06 1.03 7.80 -51.93 -0.41 0.62 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.06 1.00 7.80 -51.93 -0.41 0.59 15 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 235.70 15.07 3.55 3.55 Total: -1.00 -29.82 235.70 -6.42 -36.24 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.41 Total: -3.60 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.31 Total: -21.77 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.04 Total: -5.03 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.82 -6.42 -36.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213713774.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.459 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds