Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34333 * 126.27832 * 2 1 4 4 H 0.97005 * 125.17509 * 0.02562 * 3 2 1 5 5 N 1.39720 * 109.65273 * 179.97438 * 3 2 1 6 6 C 1.30472 * 109.52330 * 0.02562 * 5 3 2 7 7 Cl 1.73601 * 126.39353 * 180.02562 * 6 5 3 8 8 C 1.39350 * 126.27532 * 179.68717 * 2 1 3 9 9 C 1.41570 * 126.91953 * 0.03085 * 8 2 1 10 10 H 1.08004 * 120.00061 * 32.62807 * 9 8 2 11 11 C 1.39697 * 119.99879 * 212.63718 * 9 8 2 12 12 N 1.31023 * 120.00437 * 20.41869 * 11 9 8 13 13 Si 1.86803 * 119.99777 * 200.42197 * 11 9 8 14 14 H 1.48505 * 109.47224 * 89.99392 * 13 11 9 15 15 H 1.48495 * 109.47099 * 209.99719 * 13 11 9 16 16 H 1.48502 * 109.47152 * 329.99771 * 13 11 9 17 17 H 1.09000 * 109.46816 * 90.02518 * 1 2 3 18 18 H 1.08994 * 109.47089 * 330.02421 * 1 2 3 19 19 H 1.09003 * 109.46983 * 210.02312 * 1 2 3 20 20 H 0.97002 * 120.00560 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3019 1.0829 0.0000 4 1 1.9933 2.0026 0.0004 5 7 3.6407 0.6832 0.0006 6 6 3.7066 -0.6199 0.0004 7 17 5.1543 -1.5779 0.0016 8 6 2.3315 -1.1234 0.0061 9 6 1.9222 -2.4786 0.0129 10 1 1.0122 -2.7704 -0.4903 11 6 2.6953 -3.4384 0.6707 12 7 3.5480 -3.0716 1.5953 13 14 2.5132 -5.2451 0.2319 14 1 3.4620 -5.5878 -0.8579 15 1 2.8095 -6.0767 1.4259 16 1 1.1235 -5.5068 -0.2212 17 1 -0.3633 -0.0005 -1.0277 18 1 -0.3633 0.8901 0.5134 19 1 -0.3633 -0.8898 0.5142 20 1 4.0851 -3.7380 2.0518 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213724281.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = 31.988839 kcal Electronic energy + Delta-G solvation = -9363.228789 eV Core-core repulsion = 7393.276644 eV Total energy + Delta-G solvation = -1969.952145 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.05142 -37.05990 -35.19230 -32.86445 -31.41860 -28.42158 -25.97454 -22.04328 -21.06015 -18.80307 -17.03716 -16.59211 -15.49724 -15.42584 -14.60082 -14.06567 -13.54705 -13.22193 -12.91781 -12.53712 -12.44922 -12.27670 -12.05873 -11.79291 -10.86307 -10.62678 -9.66696 -8.93117 -8.31156 -5.95482 1.20562 1.30738 1.46263 1.50905 1.59057 2.16268 2.41529 2.87386 3.38861 4.42612 4.63847 4.95722 5.00812 5.24103 5.42313 5.61544 5.67428 6.51909 6.89638 7.03407 7.17253 7.31081 8.70624 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.040050 B = 0.020487 C = 0.014398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.953017 B = 1366.414235 C = 1944.281498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.067 4.067 3 N -0.463 5.463 4 H 0.440 0.560 5 N -0.336 5.336 6 C 0.079 3.921 7 Cl -0.012 7.012 8 C -0.030 4.030 9 C -0.489 4.489 10 H 0.074 0.926 11 C 0.045 3.955 12 N -0.831 5.831 13 Si 0.957 3.043 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.259 1.259 17 H 0.071 0.929 18 H 0.078 0.922 19 H 0.066 0.934 20 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 1.764 -2.140 4.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.191 4.191 3 N -0.180 5.180 4 H 0.285 0.715 5 N -0.165 5.165 6 C -0.113 4.113 7 Cl 0.016 6.984 8 C -0.041 4.041 9 C -0.522 4.522 10 H 0.092 0.908 11 C -0.168 4.168 12 N -0.459 5.459 13 Si 0.780 3.220 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.182 1.182 17 H 0.089 0.911 18 H 0.097 0.903 19 H 0.085 0.915 20 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.389 2.577 -1.967 4.027 hybrid contribution -0.059 -1.110 0.007 1.112 sum -2.448 1.467 -1.960 3.462 Atomic orbital electron populations 1.19976 0.85488 1.02873 1.02235 1.21635 0.95102 0.86460 1.15898 1.44903 1.01443 1.07994 1.63630 0.71525 1.76189 0.99132 1.12895 1.28283 1.24226 0.89471 0.89861 1.07736 1.98226 1.34279 1.69145 1.96798 1.18973 0.87328 0.94395 1.03409 1.18622 1.09667 0.90683 1.33260 0.90781 1.26175 0.93926 1.03796 0.92906 1.70038 1.20827 1.37071 1.18006 0.85580 0.79537 0.78591 0.78269 1.19847 1.20343 1.18237 0.91071 0.90301 0.91473 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.58 10.26 71.24 0.73 -0.85 14 2 C -0.07 -2.98 7.34 42.44 0.31 -2.67 14 3 N -0.46 -19.45 7.21 -45.98 -0.33 -19.78 14 4 H 0.44 14.13 8.96 -213.56 -1.91 12.22 14 5 N -0.34 -16.66 12.59 -45.55 -0.57 -17.23 14 6 C 0.08 4.20 7.65 87.03 0.67 4.87 14 7 Cl -0.01 -0.60 26.25 -2.72 -0.07 -0.67 14 8 C -0.03 -1.62 5.69 -20.05 -0.11 -1.74 14 9 C -0.49 -26.23 8.97 23.44 0.21 -26.02 14 10 H 0.07 3.81 7.92 -2.91 -0.02 3.79 14 11 C 0.05 2.34 4.81 85.17 0.41 2.75 14 12 N -0.83 -44.93 10.52 21.79 0.23 -44.70 14 13 Si 0.96 40.18 29.60 68.60 2.03 42.21 14 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 14 15 H -0.28 -11.32 7.11 99.48 0.71 -10.61 14 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 14 17 H 0.07 2.12 8.14 -2.39 -0.02 2.10 14 18 H 0.08 2.10 8.14 -2.39 -0.02 2.08 14 19 H 0.07 2.38 7.98 -2.39 -0.02 2.37 14 20 H 0.28 13.92 8.30 -92.71 -0.77 13.15 14 Total: -1.00 -61.98 201.66 2.85 -59.12 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -0.64 Total: 4.71 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 2.21 Total: -23.66 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -0.68 Total: -81.71 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.07 Total: -0.67 kcal Total: -61.98 2.85 -59.12 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213724281.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.113 kcal (2) G-P(sol) polarization free energy of solvation -61.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds