Wall clock time and date at job start Mon Mar 30 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34329 * 125.17339 * 2 1 4 4 C 1.39361 * 107.44946 * 180.02562 * 3 2 1 5 5 C 1.41564 * 126.91896 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99824 * 171.87055 * 5 4 3 7 7 C 1.39695 * 120.00031 * 351.87177 * 5 4 3 8 8 N 1.31028 * 120.00170 * 6.04626 * 7 5 4 9 9 Si 1.86806 * 119.99898 * 186.04771 * 7 5 4 10 10 H 1.48490 * 109.47130 * 90.00092 * 9 7 5 11 11 H 1.48504 * 109.46812 * 210.00083 * 9 7 5 12 12 H 1.48497 * 109.47093 * 329.99897 * 9 7 5 13 13 C 1.46445 * 106.15978 * 0.23699 * 4 3 2 14 14 Cl 1.73591 * 126.39277 * 179.72433 * 13 4 3 15 15 N 1.30475 * 107.21146 * 359.59243 * 13 4 3 16 16 H 1.09003 * 109.47205 * 90.00197 * 1 2 3 17 17 H 1.09005 * 109.47086 * 209.99897 * 1 2 3 18 18 H 1.08993 * 109.47188 * 330.00306 * 1 2 3 19 19 H 1.07992 * 126.28047 * 0.03943 * 3 2 1 20 20 H 0.97001 * 119.99831 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2388 1.0980 0.0000 4 6 3.5663 0.6738 -0.0006 5 6 4.7208 1.4930 -0.0013 6 1 5.6971 1.0503 0.1305 7 6 4.5974 2.8739 -0.1725 8 7 3.4095 3.4253 -0.2137 9 14 6.1258 3.9343 -0.3428 10 1 6.4976 4.0401 -1.7765 11 1 5.8509 5.2894 0.1986 12 1 7.2439 3.3162 0.4142 13 6 3.5263 -0.7901 -0.0068 14 17 4.8950 -1.8578 -0.0168 15 7 2.2700 -1.1421 -0.0005 16 1 -0.3634 0.0000 -1.0277 17 1 -0.3633 -0.8900 0.5138 18 1 -0.3633 0.8899 0.5137 19 1 1.8954 2.1219 0.0006 20 1 3.3238 4.3842 -0.3322 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213724360.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:28 Heat of formation + Delta-G solvation = 58.908262 kcal Electronic energy + Delta-G solvation = -9193.501000 eV Core-core repulsion = 7224.716169 eV Total energy + Delta-G solvation = -1968.784831 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.12931 -35.56066 -33.53418 -31.63882 -28.78274 -26.39547 -24.05423 -19.79761 -19.40928 -16.98678 -15.49279 -14.35428 -14.28024 -13.79263 -12.71044 -12.20752 -12.05128 -11.84562 -11.41481 -11.16601 -10.55648 -10.45978 -10.28636 -9.83018 -9.24721 -8.97523 -7.83070 -7.16071 -6.48200 -4.04216 2.76778 3.10857 3.20894 3.23473 3.26013 4.08160 4.11925 4.32835 5.44730 5.54904 5.84984 5.98470 6.48626 7.08028 7.39599 7.41455 7.71618 8.31042 8.71132 8.92259 9.09674 9.21071 10.53973 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.037559 B = 0.016775 C = 0.011679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.316894 B = 1668.794547 C = 2396.886461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.382 5.382 3 C -0.054 4.054 4 C -0.021 4.021 5 C -0.420 4.420 6 H 0.076 0.924 7 C 0.058 3.942 8 N -0.843 5.843 9 Si 0.917 3.083 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.061 3.939 14 Cl -0.038 7.038 15 N -0.322 5.322 16 H 0.054 0.946 17 H 0.070 0.930 18 H 0.076 0.924 19 H 0.197 0.803 20 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -1.617 0.124 2.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.173 5.173 3 C -0.195 4.195 4 C -0.031 4.031 5 C -0.454 4.454 6 H 0.094 0.906 7 C -0.152 4.152 8 N -0.475 5.475 9 Si 0.744 3.256 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.131 4.131 14 Cl -0.010 7.010 15 N -0.149 5.149 16 H 0.073 0.927 17 H 0.089 0.911 18 H 0.094 0.906 19 H 0.214 0.786 20 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.787 -2.402 0.112 3.681 hybrid contribution 1.235 1.092 -0.150 1.655 sum -1.552 -1.311 -0.039 2.032 Atomic orbital electron populations 1.21439 0.76730 1.02628 1.01489 1.47328 1.04621 1.03412 1.61937 1.23736 0.89828 0.91888 1.14011 1.18872 0.93464 0.86516 1.04284 1.18764 0.92871 0.90689 1.43081 0.90581 1.25558 0.97037 0.98257 0.94307 1.69458 1.23346 1.12111 1.42583 0.86143 0.81851 0.78693 0.78935 1.19978 1.20759 1.19023 1.23897 0.87326 0.90779 1.11141 1.98244 1.39902 1.65424 1.97477 1.76183 1.01543 1.10058 1.27094 0.92714 0.91147 0.90562 0.78636 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.02 11.40 59.85 0.68 2.70 14 2 N -0.38 -8.97 3.96 -67.21 -0.27 -9.24 14 3 C -0.05 -1.40 10.43 -16.04 -0.17 -1.57 14 4 C -0.02 -0.58 6.09 -104.91 -0.64 -1.22 14 5 C -0.42 -11.55 9.40 -37.77 -0.35 -11.90 14 6 H 0.08 2.04 7.85 -52.49 -0.41 1.62 14 7 C 0.06 1.50 5.49 -17.35 -0.10 1.40 14 8 N -0.84 -22.00 10.43 55.54 0.58 -21.42 14 9 Si 0.92 19.79 29.56 -169.99 -5.03 14.77 14 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 14 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 14 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 14 13 C 0.06 1.57 8.12 -14.83 -0.12 1.45 14 14 Cl -0.04 -0.83 29.28 -51.86 -1.52 -2.35 14 15 N -0.32 -8.09 12.43 34.25 0.43 -7.66 14 16 H 0.05 0.83 8.14 -51.93 -0.42 0.41 14 17 H 0.07 1.06 8.14 -51.93 -0.42 0.63 14 18 H 0.08 1.11 8.13 -51.93 -0.42 0.69 14 19 H 0.20 5.10 5.85 -52.49 -0.31 4.80 14 20 H 0.27 6.56 8.30 -40.82 -0.34 6.22 14 LS Contribution 204.30 15.07 3.08 3.08 Total: -1.00 -29.35 204.30 -4.54 -33.89 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -1.12 Total: -1.92 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.69 Total: -9.14 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.74 Total: -38.32 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.52 Total: -2.35 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -29.35 -4.54 -33.89 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213724360.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.798 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds