Wall clock time and date at job start Mon Mar 30 2020 01:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47066 * 300.00006 * 3 2 1 6 6 H 1.48496 * 109.47216 * 60.00147 * 3 2 1 7 7 C 1.37879 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.39862 * 126.04936 * 265.02116 * 10 9 7 12 12 N 1.30834 * 108.21922 * 179.97438 * 11 10 9 13 13 N 1.40085 * 108.23627 * 0.02562 * 12 11 10 14 14 H 0.97001 * 126.03091 * 179.97438 * 13 12 11 15 15 C 1.34976 * 107.92546 * 0.02562 * 13 12 11 16 16 Cl 1.73605 * 126.13894 * 180.02562 * 15 13 12 17 17 H 0.97000 * 120.00261 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.46908 * 60.00158 * 9 7 2 19 19 H 1.09000 * 109.47185 * 299.99892 * 9 7 2 20 20 H 1.08000 * 125.89171 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6907 -4.3339 -1.1271 12 7 3.5269 -5.2575 -0.7280 13 7 3.6256 -5.1862 0.6675 14 1 4.1753 -5.7537 1.2304 15 6 2.8200 -4.1893 1.0906 16 17 2.5839 -3.6927 2.7372 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 2.4057 -4.1371 -2.1500 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213724672.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:14 Heat of formation + Delta-G solvation = 56.927044 kcal Electronic energy + Delta-G solvation = -9090.668485 eV Core-core repulsion = 7121.797742 eV Total energy + Delta-G solvation = -1968.870743 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.58566 -36.21006 -33.40482 -31.27844 -30.24398 -26.62613 -22.94868 -21.44375 -19.50014 -17.38466 -16.23819 -14.46501 -14.34535 -14.26178 -13.05488 -12.51624 -12.09773 -11.45320 -11.33476 -11.05391 -10.63632 -10.62963 -10.11224 -9.61977 -9.41890 -8.99424 -8.35140 -7.63561 -5.96649 -3.98931 2.10191 2.23127 3.33620 3.36697 3.42234 3.48492 3.61361 4.50942 5.31433 5.39697 5.98148 6.15489 6.63340 7.21057 7.50467 7.63142 7.71247 7.99422 8.09180 8.41322 9.05305 9.64194 11.13195 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.047518 B = 0.013169 C = 0.011829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.106209 B = 2125.694176 C = 2366.496545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.081 3.919 10 C -0.153 4.153 11 C 0.056 3.944 12 N -0.291 5.291 13 N -0.485 5.485 14 H 0.432 0.568 15 C 0.101 3.899 16 Cl -0.012 7.012 17 H 0.260 0.740 18 H 0.031 0.969 19 H 0.031 0.969 20 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -7.113 2.569 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.043 3.957 10 C -0.165 4.165 11 C -0.130 4.130 12 N -0.116 5.116 13 N -0.198 5.198 14 H 0.275 0.725 15 C -0.051 4.051 16 Cl 0.015 6.985 17 H 0.070 0.930 18 H 0.049 0.951 19 H 0.050 0.950 20 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.117 -7.862 2.348 9.670 hybrid contribution 0.255 1.382 0.774 1.604 sum 5.373 -6.480 3.122 8.978 Atomic orbital electron populations 1.69957 1.05942 1.26510 1.51073 1.24964 0.94804 0.99020 0.95443 0.86555 0.80180 0.83890 0.77530 1.19792 1.21043 1.21074 1.21099 0.92935 0.89983 1.50143 0.92720 1.17769 0.91525 0.87986 0.98414 1.20710 1.04798 1.01997 0.88993 1.23773 0.95450 0.93443 1.00299 1.77281 1.22873 1.24040 0.87362 1.46209 1.38351 1.29138 1.06139 0.72471 1.21351 1.00156 0.95543 0.88013 1.98370 1.95605 1.89737 1.14744 0.93029 0.95101 0.95037 0.79637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.48 14 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 14 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 14 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 14 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 14 7 C -0.50 -13.90 9.09 -34.44 -0.31 -14.22 14 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 14 9 C 0.08 2.05 5.26 -29.04 -0.15 1.90 14 10 C -0.15 -3.32 5.29 -105.01 -0.56 -3.87 14 11 C 0.06 1.07 11.96 -17.37 -0.21 0.87 14 12 N -0.29 -5.34 12.70 30.62 0.39 -4.95 14 13 N -0.48 -8.17 7.36 32.76 0.24 -7.93 14 14 H 0.43 5.61 8.96 -182.61 -1.64 3.97 14 15 C 0.10 1.95 7.82 -17.16 -0.13 1.82 14 16 Cl -0.01 -0.22 29.01 -51.86 -1.50 -1.72 14 17 H 0.26 7.20 8.31 -40.82 -0.34 6.86 14 18 H 0.03 0.81 8.14 -51.93 -0.42 0.38 14 19 H 0.03 0.84 8.06 -51.93 -0.42 0.42 14 20 H 0.19 3.06 8.06 -52.49 -0.42 2.63 14 LS Contribution 207.35 15.07 3.12 3.12 Total: -1.00 -30.04 207.35 -5.94 -35.98 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -2.44 Total: -3.56 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.46 Total: -11.96 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 1.37 Total: -38.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.50 Total: -1.72 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -30.04 -5.94 -35.98 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213724672.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.902 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds