Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48496 * 109.47445 * 239.99640 * 3 2 1 5 5 H 1.48499 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47094 * 119.99650 * 3 2 1 7 7 C 1.37877 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00462 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99976 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46442 * 299.99714 * 9 7 2 11 11 C 1.53001 * 109.47316 * 59.99477 * 9 7 2 12 12 C 1.52997 * 109.47050 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46843 * 300.00019 * 12 11 9 14 14 C 1.52998 * 109.46956 * 60.00175 * 13 12 11 15 15 C 1.52997 * 109.47201 * 299.99605 * 14 13 12 16 16 H 1.08997 * 109.46932 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.47594 * 300.00451 * 15 14 13 18 18 H 0.96996 * 119.99849 * 0.02562 * 1 2 3 19 19 H 0.96700 * 114.00311 * 60.00230 * 10 9 7 20 20 H 1.08999 * 109.47164 * 300.00418 * 11 9 7 21 21 H 1.08997 * 109.47124 * 60.00119 * 11 9 7 22 22 H 1.08997 * 109.46932 * 180.02562 * 12 11 9 23 23 H 1.08997 * 109.47549 * 59.99780 * 12 11 9 24 24 H 1.09006 * 109.46634 * 300.00182 * 13 12 11 25 25 H 1.08997 * 109.46829 * 180.02562 * 13 12 11 26 26 H 1.09009 * 109.46785 * 179.97438 * 14 13 12 27 27 H 1.08997 * 109.47329 * 60.00303 * 14 13 12 28 28 H 0.96700 * 113.99943 * 299.99851 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4291 -2.5745 1.1671 11 6 0.3717 -2.5805 -1.2490 12 6 -0.3937 -3.9053 -1.2486 13 6 0.6003 -5.0685 -1.2477 14 6 1.4794 -4.9871 0.0018 15 6 2.2449 -3.6624 0.0014 16 1 2.8715 -3.6047 0.8913 17 8 3.0668 -3.5874 -1.1651 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2264 -1.8666 1.2329 20 1 -0.3366 -1.7520 -1.2494 21 1 0.9986 -2.5230 -2.1387 22 1 -1.0197 -3.9634 -2.1389 23 1 -1.0206 -3.9625 -0.3588 24 1 1.2272 -5.0113 -2.1376 25 1 0.0549 -6.0123 -1.2479 26 1 2.1873 -5.8162 0.0026 27 1 0.8525 -5.0443 0.8916 28 1 3.7221 -4.2955 -1.2307 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223293564.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -139.819247 kcal Electronic energy + Delta-G solvation = -12443.053144 eV Core-core repulsion = 10264.315115 eV Total energy + Delta-G solvation = -2178.738029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.24926 -36.85626 -35.14666 -34.09360 -30.77804 -30.21542 -26.75519 -23.34363 -22.59527 -20.34332 -18.88417 -17.61979 -17.04051 -16.14297 -15.94366 -15.62803 -15.14704 -13.92753 -13.76061 -13.72236 -13.48960 -13.11043 -12.82402 -12.40723 -12.29004 -12.10266 -11.83187 -11.74577 -11.27211 -10.71482 -10.57148 -10.46756 -9.86878 -8.13466 -6.30280 1.39705 1.40268 1.48597 2.40262 2.99392 3.51561 4.06301 4.11070 4.15073 4.50944 4.63210 4.77729 4.80962 4.94507 4.96033 5.10108 5.24217 5.35183 5.43555 5.60185 5.64135 5.85477 6.07465 6.23726 6.73264 7.15429 7.38912 7.48793 8.86356 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055865 B = 0.015731 C = 0.014213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.083503 B = 1779.503903 C = 1969.557164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.044 0.956 9 C 0.246 3.754 10 O -0.593 6.593 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.139 4.139 15 C 0.125 3.875 16 H 0.031 0.969 17 O -0.564 6.564 18 H 0.268 0.732 19 H 0.378 0.622 20 H 0.061 0.939 21 H 0.031 0.969 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -7.221 -1.516 7.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.062 0.938 9 C 0.207 3.793 10 O -0.402 6.402 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.176 4.176 15 C 0.066 3.934 16 H 0.049 0.951 17 O -0.370 6.370 18 H 0.077 0.923 19 H 0.227 0.773 20 H 0.079 0.921 21 H 0.050 0.950 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.335 -7.104 -1.513 7.385 hybrid contribution 0.399 1.206 0.050 1.271 sum 1.734 -5.898 -1.464 6.320 Atomic orbital electron populations 1.69680 1.06569 1.27861 1.51486 1.25676 0.95911 1.02134 0.93787 0.85648 0.78525 0.79145 0.78459 1.20283 1.20240 1.19996 1.21956 0.93323 0.92859 1.50650 0.93755 1.18502 0.87095 0.91020 0.82668 1.85972 1.52760 1.54828 1.46678 1.21890 0.99004 0.97072 0.98234 1.21500 0.97923 0.95379 1.00369 1.21374 0.97267 0.97737 0.97716 1.22130 0.99616 0.96715 0.99184 1.21366 0.91073 0.94734 0.86248 0.95138 1.86561 1.51463 1.54685 1.44288 0.92265 0.77282 0.92054 0.94979 0.92528 0.93255 0.92010 0.90591 0.89947 0.91903 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.74 9.68 21.45 0.21 -50.53 15 2 C 0.02 1.32 5.22 84.65 0.44 1.76 15 3 Si 0.96 44.37 29.54 68.60 2.03 46.40 15 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.55 -31.44 7.91 25.60 0.20 -31.24 15 8 H 0.04 2.59 7.70 -2.91 -0.02 2.57 15 9 C 0.25 12.69 0.50 -11.54 -0.01 12.68 15 10 O -0.59 -31.30 11.61 -148.98 -1.73 -33.03 15 11 C -0.12 -6.11 4.55 30.59 0.14 -5.97 15 12 C -0.11 -4.56 5.78 30.60 0.18 -4.39 15 13 C -0.10 -3.48 5.78 30.60 0.18 -3.30 15 14 C -0.14 -4.85 5.49 30.59 0.17 -4.68 15 15 C 0.12 5.41 2.90 30.59 0.09 5.50 15 16 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 17 O -0.56 -22.78 11.56 -148.98 -1.72 -24.50 15 18 H 0.27 14.13 8.31 -92.71 -0.77 13.36 15 19 H 0.38 20.61 7.14 -74.06 -0.53 20.08 15 20 H 0.06 3.34 6.07 -2.39 -0.01 3.33 15 21 H 0.03 1.64 7.68 -2.39 -0.02 1.62 15 22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.05 2.03 7.68 -2.39 -0.02 2.01 15 24 H 0.06 2.05 7.68 -2.38 -0.02 2.03 15 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.08 2.26 8.14 -2.38 -0.02 2.24 15 27 H 0.06 2.34 7.68 -2.39 -0.02 2.32 15 28 H 0.38 10.69 9.08 -74.06 -0.67 10.02 15 Total: -1.00 -61.97 223.42 0.13 -61.84 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.04 Total: 29.45 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 1.39 Total: -29.63 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.21 Total: -50.53 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -3.45 Total: -57.53 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.97 0.13 -61.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223293564.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.977 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds