Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47273 * 300.00037 * 9 7 2 11 11 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 12 12 C 1.53000 * 109.47415 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47355 * 300.00324 * 12 11 9 14 14 C 1.53000 * 109.47124 * 59.99497 * 13 12 11 15 15 C 1.53000 * 109.47415 * 300.00466 * 14 13 12 16 16 H 1.09002 * 109.46807 * 299.99967 * 15 14 13 17 17 O 1.42898 * 109.47304 * 179.97438 * 15 14 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 0.96699 * 114.00327 * 60.00405 * 10 9 7 20 20 H 1.08995 * 109.47131 * 300.00066 * 11 9 7 21 21 H 1.09002 * 109.47106 * 59.99951 * 11 9 7 22 22 H 1.09000 * 109.46966 * 180.02562 * 12 11 9 23 23 H 1.09002 * 109.46807 * 60.00033 * 12 11 9 24 24 H 1.08999 * 109.47071 * 300.00393 * 13 12 11 25 25 H 1.08998 * 109.47385 * 179.97438 * 13 12 11 26 26 H 1.08995 * 109.47131 * 180.02562 * 14 13 12 27 27 H 1.09002 * 109.47106 * 60.00250 * 14 13 12 28 28 H 0.96707 * 114.00007 * 59.99954 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4299 -2.5751 1.1665 11 6 0.3709 -2.5799 -1.2494 12 6 -0.3936 -3.9052 -1.2498 13 6 0.6009 -5.0679 -1.2507 14 6 1.4811 -4.9871 -0.0018 15 6 2.2456 -3.6618 -0.0014 16 1 2.8719 -3.6035 -0.8917 17 8 3.0672 -3.5861 1.1653 18 1 -0.4850 0.8401 0.0004 19 1 -0.2255 -1.8673 1.2331 20 1 -0.3373 -1.7515 -1.2490 21 1 0.9972 -2.5220 -2.1397 22 1 -1.0203 -3.9629 -2.1398 23 1 -1.0199 -3.9635 -0.3595 24 1 1.2273 -5.0095 -2.1408 25 1 0.0563 -6.0120 -1.2504 26 1 2.1899 -5.8151 -0.0026 27 1 0.8548 -5.0454 0.8885 28 1 3.7229 -4.2938 1.2313 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223293616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = -118.566615 kcal Electronic energy + Delta-G solvation = -12391.641757 eV Core-core repulsion = 10213.825311 eV Total energy + Delta-G solvation = -2177.816446 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.38371 -34.93499 -33.77855 -31.95853 -28.96518 -28.32236 -24.77767 -21.67499 -20.76819 -18.63712 -16.81346 -16.24179 -14.97146 -14.55311 -14.02061 -13.30551 -13.20019 -12.99839 -12.15947 -11.87971 -11.23165 -11.08770 -10.98041 -10.86534 -10.44604 -10.22590 -10.02059 -9.94191 -9.57079 -9.08901 -8.77150 -8.45501 -7.88275 -6.06049 -4.14109 3.30287 3.36555 3.40582 4.40920 5.10496 5.28320 5.54490 5.57057 5.82114 6.09415 6.14986 6.23709 6.31872 6.40995 6.58088 6.64343 6.82034 6.98667 7.09014 7.27319 7.65107 7.72808 8.04321 8.28375 8.64960 8.87841 9.51993 9.68585 10.97045 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.051683 B = 0.016084 C = 0.013905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.631846 B = 1740.496179 C = 2013.225683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.262 3.738 10 O -0.582 6.582 11 C -0.137 4.137 12 C -0.119 4.119 13 C -0.111 4.111 14 C -0.147 4.147 15 C 0.124 3.876 16 H 0.045 0.955 17 O -0.545 6.545 18 H 0.265 0.735 19 H 0.377 0.623 20 H 0.099 0.901 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -6.253 -2.446 6.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.222 3.778 10 O -0.390 6.390 11 C -0.176 4.176 12 C -0.156 4.156 13 C -0.149 4.149 14 C -0.185 4.185 15 C 0.066 3.934 16 H 0.063 0.937 17 O -0.347 6.347 18 H 0.075 0.925 19 H 0.226 0.774 20 H 0.117 0.883 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.892 -6.115 -2.233 6.571 hybrid contribution 0.477 0.880 -0.334 1.055 sum 1.369 -5.235 -2.567 5.989 Atomic orbital electron populations 1.69591 1.05838 1.27057 1.52131 1.24995 0.94998 0.99350 0.94241 0.86472 0.79741 0.82831 0.78177 1.20584 1.19977 1.21259 1.21733 0.93829 0.90885 1.49256 0.92178 1.18533 0.86000 0.90469 0.82790 1.86139 1.52551 1.54527 1.45778 1.22201 1.00187 0.96478 0.98692 1.21572 0.97711 0.95961 1.00389 1.21444 0.97854 0.98184 0.97392 1.22228 0.99319 0.97622 0.99332 1.21921 0.90803 0.94312 0.86399 0.93738 1.86818 1.50408 1.52235 1.45197 0.92517 0.77371 0.88276 0.93982 0.93892 0.92048 0.92927 0.93264 0.93789 0.90814 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 9.68 55.43 0.54 -24.26 15 2 C 0.06 1.76 5.22 -17.82 -0.09 1.67 15 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.52 -14.65 7.91 -34.44 -0.27 -14.92 15 8 H 0.06 1.74 7.70 -52.49 -0.40 1.33 15 9 C 0.26 6.71 0.44 -91.77 -0.04 6.67 15 10 O -0.58 -15.77 11.51 -44.87 -0.52 -16.29 15 11 C -0.14 -3.23 4.69 -26.73 -0.13 -3.36 15 12 C -0.12 -2.36 5.78 -26.73 -0.15 -2.51 15 13 C -0.11 -1.95 5.92 -26.73 -0.16 -2.11 15 14 C -0.15 -2.79 5.40 -26.73 -0.14 -2.94 15 15 C 0.12 2.78 2.63 -26.73 -0.07 2.71 15 16 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 17 O -0.55 -12.28 12.80 -44.87 -0.57 -12.85 15 18 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 19 H 0.38 10.40 7.15 45.56 0.33 10.72 15 20 H 0.10 2.56 6.07 -51.93 -0.32 2.24 15 21 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.06 1.27 7.68 -51.93 -0.40 0.87 15 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.07 1.53 7.68 -51.93 -0.40 1.13 15 28 H 0.35 5.74 9.08 45.56 0.41 6.15 15 LS Contribution 225.35 15.07 3.40 3.40 Total: -1.00 -29.84 225.35 -5.69 -35.53 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -2.45 Total: 12.69 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.06 Total: -14.78 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.54 Total: -24.26 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.09 Total: -29.14 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.84 -5.69 -35.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223293616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.040 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds