Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47273 * 300.00037 * 9 7 2 11 11 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 12 12 C 1.53000 * 109.47415 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47355 * 300.00324 * 12 11 9 14 14 C 1.53000 * 109.47124 * 59.99497 * 13 12 11 15 15 C 1.53000 * 109.47415 * 300.00466 * 14 13 12 16 16 H 1.09002 * 109.46807 * 299.99967 * 15 14 13 17 17 O 1.42898 * 109.47304 * 179.97438 * 15 14 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 0.96699 * 114.00327 * 60.00405 * 10 9 7 20 20 H 1.08995 * 109.47131 * 300.00066 * 11 9 7 21 21 H 1.09002 * 109.47106 * 59.99951 * 11 9 7 22 22 H 1.09000 * 109.46966 * 180.02562 * 12 11 9 23 23 H 1.09002 * 109.46807 * 60.00033 * 12 11 9 24 24 H 1.08999 * 109.47071 * 300.00393 * 13 12 11 25 25 H 1.08998 * 109.47385 * 179.97438 * 13 12 11 26 26 H 1.08995 * 109.47131 * 180.02562 * 14 13 12 27 27 H 1.09002 * 109.47106 * 60.00250 * 14 13 12 28 28 H 0.96707 * 114.00007 * 59.99954 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4299 -2.5751 1.1665 11 6 0.3709 -2.5799 -1.2494 12 6 -0.3936 -3.9052 -1.2498 13 6 0.6009 -5.0679 -1.2507 14 6 1.4811 -4.9871 -0.0018 15 6 2.2456 -3.6618 -0.0014 16 1 2.8719 -3.6035 -0.8917 17 8 3.0672 -3.5861 1.1653 18 1 -0.4850 0.8401 0.0004 19 1 -0.2255 -1.8673 1.2331 20 1 -0.3373 -1.7515 -1.2490 21 1 0.9972 -2.5220 -2.1397 22 1 -1.0203 -3.9629 -2.1398 23 1 -1.0199 -3.9635 -0.3595 24 1 1.2273 -5.0095 -2.1408 25 1 0.0563 -6.0120 -1.2504 26 1 2.1899 -5.8151 -0.0026 27 1 0.8548 -5.0454 0.8885 28 1 3.7229 -4.2938 1.2313 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223293616.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = -141.467426 kcal Electronic energy + Delta-G solvation = -12392.634810 eV Core-core repulsion = 10213.825311 eV Total energy + Delta-G solvation = -2178.809500 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.14717 -36.75762 -35.52384 -34.07387 -30.70535 -30.12483 -26.74367 -23.36971 -22.46234 -20.39874 -18.85945 -17.95526 -17.01827 -16.35131 -15.80924 -15.14740 -14.93817 -14.56027 -13.91852 -13.64171 -13.13133 -12.92490 -12.87021 -12.60654 -12.26767 -12.06097 -11.87091 -11.59668 -11.32522 -10.81530 -10.53985 -10.49188 -9.90229 -8.13138 -6.30035 1.38214 1.40452 1.49756 2.40414 3.05454 3.66198 3.99754 4.06960 4.20736 4.41249 4.52996 4.59868 4.75620 4.89108 4.94152 5.10226 5.27594 5.34939 5.42168 5.56731 5.63748 5.82141 6.06166 6.25704 6.73376 7.17587 7.39368 7.55867 8.86693 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.051683 B = 0.016084 C = 0.013905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.631846 B = 1740.496179 C = 2013.225683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.549 4.549 8 H 0.043 0.957 9 C 0.244 3.756 10 O -0.590 6.590 11 C -0.132 4.132 12 C -0.115 4.115 13 C -0.107 4.107 14 C -0.139 4.139 15 C 0.120 3.880 16 H 0.050 0.950 17 O -0.573 6.573 18 H 0.267 0.733 19 H 0.368 0.632 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -7.246 -3.157 8.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.061 0.939 9 C 0.205 3.795 10 O -0.397 6.397 11 C -0.170 4.170 12 C -0.152 4.152 13 C -0.145 4.145 14 C -0.177 4.177 15 C 0.062 3.938 16 H 0.068 0.932 17 O -0.378 6.378 18 H 0.077 0.923 19 H 0.217 0.783 20 H 0.088 0.912 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.242 -7.132 -2.949 7.817 hybrid contribution 0.394 1.201 -0.087 1.267 sum 1.636 -5.931 -3.035 6.861 Atomic orbital electron populations 1.69688 1.06547 1.27750 1.51634 1.25667 0.95903 1.02091 0.93852 0.85598 0.78760 0.79464 0.77975 1.20723 1.19785 1.20138 1.21987 0.93308 0.92919 1.50515 0.93878 1.18837 0.86656 0.91102 0.82896 1.86136 1.52531 1.54048 1.47019 1.22020 0.99537 0.97810 0.97630 1.21517 0.98044 0.94899 1.00772 1.21451 0.97428 0.98386 0.97192 1.22139 0.99594 0.96757 0.99178 1.21890 0.90554 0.94896 0.86489 0.93194 1.86733 1.51507 1.54192 1.45396 0.92307 0.78340 0.91161 0.94113 0.91639 0.93507 0.91433 0.90053 0.90091 0.92908 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.70 9.68 21.45 0.21 -50.50 15 2 C 0.02 1.31 5.22 84.66 0.44 1.75 15 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 15 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 15 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 7 C -0.55 -31.42 7.91 25.60 0.20 -31.21 15 8 H 0.04 2.53 7.70 -2.91 -0.02 2.51 15 9 C 0.24 12.57 0.44 -11.54 -0.01 12.57 15 10 O -0.59 -32.48 11.51 -139.76 -1.61 -34.09 15 11 C -0.13 -6.17 4.69 30.59 0.14 -6.03 15 12 C -0.11 -4.35 5.78 30.59 0.18 -4.17 15 13 C -0.11 -3.39 5.92 30.59 0.18 -3.21 15 14 C -0.14 -4.89 5.40 30.59 0.17 -4.73 15 15 C 0.12 5.24 2.63 30.59 0.08 5.32 15 16 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 17 O -0.57 -25.31 12.80 -139.76 -1.79 -27.10 15 18 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 19 H 0.37 20.92 7.15 -74.06 -0.53 20.39 15 20 H 0.07 3.67 6.07 -2.39 -0.01 3.66 15 21 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.05 1.89 7.68 -2.39 -0.02 1.87 15 24 H 0.07 1.96 8.14 -2.39 -0.02 1.95 15 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.08 2.25 8.14 -2.39 -0.02 2.24 15 27 H 0.05 2.08 7.68 -2.39 -0.02 2.06 15 28 H 0.37 11.66 9.08 -74.05 -0.67 10.99 15 Total: -1.00 -63.72 225.35 0.18 -63.54 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.04 Total: 31.39 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 1.39 Total: -29.70 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.21 Total: -50.50 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -3.40 Total: -61.19 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.72 0.18 -63.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223293616.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.924 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds