Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48505 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47438 * 300.00397 * 3 2 1 6 6 H 1.48501 * 109.46950 * 60.00359 * 3 2 1 7 7 C 1.37873 * 120.00667 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00851 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99667 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47227 * 59.99596 * 9 7 2 11 11 C 1.53006 * 109.46735 * 299.99919 * 9 7 2 12 12 C 1.53002 * 109.46977 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46637 * 59.99946 * 12 11 9 14 14 C 1.52996 * 109.47486 * 299.99742 * 13 12 11 15 15 C 1.52997 * 109.47141 * 180.02562 * 9 7 2 16 16 H 1.09002 * 109.47153 * 299.99670 * 15 9 7 17 17 O 1.42898 * 109.47319 * 59.99977 * 15 9 7 18 18 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 19 19 H 0.96698 * 114.00355 * 300.00606 * 10 9 7 20 20 H 1.09000 * 109.47050 * 60.00052 * 11 9 7 21 21 H 1.08993 * 109.46955 * 300.00223 * 11 9 7 22 22 H 1.08996 * 109.47407 * 300.00489 * 12 11 9 23 23 H 1.08992 * 109.47063 * 180.02562 * 12 11 9 24 24 H 1.09001 * 109.47109 * 179.97438 * 13 12 11 25 25 H 1.09004 * 109.47086 * 60.00158 * 13 12 11 26 26 H 1.08996 * 109.47452 * 300.00003 * 14 13 12 27 27 H 1.09000 * 109.47054 * 180.02562 * 14 13 12 28 28 H 0.96701 * 113.99881 * 180.02562 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4291 -2.5746 -1.1669 11 6 0.3720 -2.5805 1.2491 12 6 -0.3934 -3.9052 1.2489 13 6 0.6005 -5.0684 1.2479 14 6 1.4796 -4.9871 -0.0017 15 6 2.2454 -3.6620 -0.0005 16 1 2.8721 -3.6043 -0.8906 17 8 3.0670 -3.5863 1.1662 18 1 -0.4851 0.8400 0.0004 19 1 -0.2264 -1.8667 -1.2327 20 1 -0.3363 -1.7520 1.2496 21 1 0.9990 -2.5228 2.1388 22 1 -1.0204 -3.9625 0.3591 23 1 -1.0200 -3.9630 2.1388 24 1 0.0553 -6.0123 1.2481 25 1 1.2276 -5.0112 2.1377 26 1 0.8526 -5.0443 -0.8914 27 1 2.1874 -5.8161 -0.0026 28 1 3.7227 -4.2940 1.2321 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223293669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = -117.382142 kcal Electronic energy + Delta-G solvation = -12442.170625 eV Core-core repulsion = 10264.405542 eV Total energy + Delta-G solvation = -2177.765083 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.48259 -35.02170 -33.44120 -31.99879 -29.04527 -28.36032 -24.77277 -21.61862 -20.85676 -18.56045 -16.84241 -15.95788 -14.99472 -14.43041 -14.12248 -13.83521 -13.33966 -12.16188 -12.02744 -11.90721 -11.75211 -11.23225 -10.94540 -10.58886 -10.49124 -10.25934 -10.00721 -9.97701 -9.45453 -9.01398 -8.72018 -8.45298 -7.88119 -6.06295 -4.14278 3.28326 3.36342 3.42306 4.40610 4.92477 5.33847 5.59646 5.67429 5.70465 6.20684 6.30529 6.37676 6.45662 6.57788 6.65104 6.74399 6.92842 6.94773 7.10079 7.40985 7.66824 7.84480 8.08425 8.28335 8.57354 8.88407 9.50244 9.60122 10.96730 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055863 B = 0.015732 C = 0.014214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.109910 B = 1779.432165 C = 1969.470691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.261 3.739 10 O -0.592 6.592 11 C -0.132 4.132 12 C -0.117 4.117 13 C -0.108 4.108 14 C -0.146 4.146 15 C 0.124 3.876 16 H 0.042 0.958 17 O -0.548 6.548 18 H 0.264 0.736 19 H 0.385 0.615 20 H 0.090 0.910 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -6.231 1.178 6.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.222 3.778 10 O -0.402 6.402 11 C -0.170 4.170 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.184 4.184 15 C 0.065 3.935 16 H 0.060 0.940 17 O -0.351 6.351 18 H 0.074 0.926 19 H 0.236 0.764 20 H 0.108 0.892 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.069 -6.094 1.174 6.298 hybrid contribution 0.443 0.886 0.042 0.992 sum 1.512 -5.208 1.216 5.558 Atomic orbital electron populations 1.69601 1.05847 1.26955 1.52142 1.25002 0.94994 0.99380 0.94228 0.86424 0.80184 0.83190 0.77478 1.19786 1.21008 1.20994 1.21768 0.93840 0.90837 1.49101 0.92080 1.18297 0.86472 0.90300 0.82715 1.85974 1.52848 1.55313 1.46054 1.22091 0.99794 0.95669 0.99460 1.21538 0.97540 0.96447 0.99889 1.21386 0.97731 0.97527 0.97933 1.22207 0.99265 0.97556 0.99354 1.21549 0.91446 0.94232 0.86254 0.94005 1.86625 1.50595 1.52858 1.44995 0.92569 0.76443 0.89184 0.93264 0.92546 0.94236 0.93929 0.92371 0.90876 0.93791 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 9.68 55.43 0.54 -24.26 15 2 C 0.06 1.76 5.22 -17.82 -0.09 1.67 15 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 7 C -0.52 -14.57 7.91 -34.44 -0.27 -14.85 15 8 H 0.06 1.76 7.70 -52.49 -0.40 1.36 15 9 C 0.26 6.70 0.50 -91.77 -0.05 6.65 15 10 O -0.59 -15.46 11.61 -35.23 -0.41 -15.87 15 11 C -0.13 -3.25 4.55 -26.73 -0.12 -3.37 15 12 C -0.12 -2.42 5.78 -26.73 -0.15 -2.58 15 13 C -0.11 -2.00 5.78 -26.73 -0.15 -2.15 15 14 C -0.15 -2.76 5.49 -26.71 -0.15 -2.91 15 15 C 0.12 2.75 2.89 -26.71 -0.08 2.68 15 16 H 0.04 0.95 8.14 -51.93 -0.42 0.52 15 17 O -0.55 -11.46 11.56 -35.23 -0.41 -11.87 15 18 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 19 H 0.38 10.28 7.14 45.56 0.33 10.61 15 20 H 0.09 2.41 6.07 -51.93 -0.32 2.10 15 21 H 0.05 1.26 7.68 -51.93 -0.40 0.86 15 22 H 0.06 1.20 7.68 -51.93 -0.40 0.80 15 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.06 1.06 7.68 -51.93 -0.40 0.67 15 26 H 0.07 1.45 7.68 -51.93 -0.40 1.05 15 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 28 H 0.36 5.43 9.08 45.56 0.41 5.84 15 LS Contribution 223.42 15.07 3.37 3.37 Total: -1.00 -29.16 223.42 -5.40 -34.56 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -2.40 Total: 12.39 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.07 Total: -14.85 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.54 Total: -24.26 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.82 Total: -27.73 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.16 -5.40 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223293669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.827 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds