Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48505 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47438 * 300.00397 * 3 2 1 6 6 H 1.48501 * 109.46950 * 60.00359 * 3 2 1 7 7 C 1.37873 * 120.00667 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00851 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99667 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47227 * 59.99596 * 9 7 2 11 11 C 1.53006 * 109.46735 * 299.99919 * 9 7 2 12 12 C 1.53002 * 109.46977 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46637 * 59.99946 * 12 11 9 14 14 C 1.52996 * 109.47486 * 299.99742 * 13 12 11 15 15 C 1.52997 * 109.47141 * 180.02562 * 9 7 2 16 16 H 1.09002 * 109.47153 * 299.99670 * 15 9 7 17 17 O 1.42898 * 109.47319 * 59.99977 * 15 9 7 18 18 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 19 19 H 0.96698 * 114.00355 * 300.00606 * 10 9 7 20 20 H 1.09000 * 109.47050 * 60.00052 * 11 9 7 21 21 H 1.08993 * 109.46955 * 300.00223 * 11 9 7 22 22 H 1.08996 * 109.47407 * 300.00489 * 12 11 9 23 23 H 1.08992 * 109.47063 * 180.02562 * 12 11 9 24 24 H 1.09001 * 109.47109 * 179.97438 * 13 12 11 25 25 H 1.09004 * 109.47086 * 60.00158 * 13 12 11 26 26 H 1.08996 * 109.47452 * 300.00003 * 14 13 12 27 27 H 1.09000 * 109.47054 * 180.02562 * 14 13 12 28 28 H 0.96701 * 113.99881 * 180.02562 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4291 -2.5746 -1.1669 11 6 0.3720 -2.5805 1.2491 12 6 -0.3934 -3.9052 1.2489 13 6 0.6005 -5.0684 1.2479 14 6 1.4796 -4.9871 -0.0017 15 6 2.2454 -3.6620 -0.0005 16 1 2.8721 -3.6043 -0.8906 17 8 3.0670 -3.5863 1.1662 18 1 -0.4851 0.8400 0.0004 19 1 -0.2264 -1.8667 -1.2327 20 1 -0.3363 -1.7520 1.2496 21 1 0.9990 -2.5228 2.1388 22 1 -1.0204 -3.9625 0.3591 23 1 -1.0200 -3.9630 2.1388 24 1 0.0553 -6.0123 1.2481 25 1 1.2276 -5.0112 2.1377 26 1 0.8526 -5.0443 -0.8914 27 1 2.1874 -5.8161 -0.0026 28 1 3.7227 -4.2940 1.2321 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223293669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = -139.909449 kcal Electronic energy + Delta-G solvation = -12443.147482 eV Core-core repulsion = 10264.405542 eV Total energy + Delta-G solvation = -2178.741941 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.24856 -36.85651 -35.14788 -34.09605 -30.77739 -30.21707 -26.75894 -23.34380 -22.59561 -20.34492 -18.88870 -17.62015 -17.04733 -16.14381 -15.94039 -15.62575 -15.15210 -13.93564 -13.75980 -13.72035 -13.49255 -13.11462 -12.84394 -12.36059 -12.29984 -12.11194 -11.83714 -11.74092 -11.27262 -10.71516 -10.57581 -10.46841 -9.86518 -8.13879 -6.30588 1.37218 1.39756 1.51252 2.40070 2.99059 3.51434 4.06179 4.11087 4.15059 4.50938 4.63121 4.77752 4.80941 4.94498 4.96050 5.10106 5.24227 5.35162 5.43596 5.60140 5.64334 5.85444 6.07399 6.23539 6.73509 7.15385 7.38839 7.48655 8.86257 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055863 B = 0.015732 C = 0.014214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.109910 B = 1779.432165 C = 1969.470691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.246 3.754 10 O -0.593 6.593 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.139 4.139 15 C 0.125 3.875 16 H 0.030 0.970 17 O -0.564 6.564 18 H 0.268 0.732 19 H 0.378 0.622 20 H 0.061 0.939 21 H 0.032 0.968 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -7.238 1.520 7.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.062 0.938 9 C 0.207 3.793 10 O -0.402 6.402 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.176 4.176 15 C 0.066 3.934 16 H 0.048 0.952 17 O -0.370 6.370 18 H 0.077 0.923 19 H 0.227 0.773 20 H 0.079 0.921 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.350 -7.125 1.517 7.409 hybrid contribution 0.377 1.215 -0.050 1.273 sum 1.727 -5.910 1.468 6.329 Atomic orbital electron populations 1.69692 1.06569 1.27724 1.51665 1.25677 0.95906 1.02151 0.93816 0.85536 0.78759 0.79646 0.77786 1.20080 1.20147 1.20404 1.22007 0.93312 0.92842 1.50397 0.93781 1.18511 0.87107 0.91047 0.82680 1.85969 1.52747 1.54826 1.46679 1.21891 0.99006 0.97067 0.98240 1.21497 0.97918 0.95381 1.00372 1.21372 0.97267 0.97733 0.97720 1.22137 0.99608 0.96710 0.99183 1.21372 0.91076 0.94730 0.86244 0.95151 1.86560 1.51438 1.54716 1.44265 0.92288 0.77278 0.92068 0.94953 0.93265 0.92529 0.90595 0.92003 0.91896 0.89951 0.77057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.74 9.68 21.45 0.21 -50.53 15 2 C 0.02 1.29 5.22 84.65 0.44 1.73 15 3 Si 0.96 44.41 29.54 68.60 2.03 46.44 15 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 7 C -0.55 -31.31 7.91 25.60 0.20 -31.11 15 8 H 0.04 2.59 7.70 -2.91 -0.02 2.57 15 9 C 0.25 12.65 0.50 -11.54 -0.01 12.64 15 10 O -0.59 -31.28 11.61 -148.98 -1.73 -33.01 15 11 C -0.12 -6.11 4.55 30.60 0.14 -5.97 15 12 C -0.11 -4.56 5.78 30.60 0.18 -4.38 15 13 C -0.10 -3.47 5.78 30.59 0.18 -3.30 15 14 C -0.14 -4.85 5.49 30.61 0.17 -4.68 15 15 C 0.12 5.41 2.89 30.61 0.09 5.50 15 16 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 17 O -0.56 -22.77 11.56 -148.98 -1.72 -24.50 15 18 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 19 H 0.38 20.61 7.14 -74.06 -0.53 20.08 15 20 H 0.06 3.33 6.07 -2.39 -0.01 3.32 15 21 H 0.03 1.65 7.68 -2.39 -0.02 1.63 15 22 H 0.05 2.02 7.68 -2.39 -0.02 2.00 15 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 25 H 0.06 2.05 7.68 -2.38 -0.02 2.03 15 26 H 0.06 2.34 7.68 -2.39 -0.02 2.32 15 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 28 H 0.38 10.70 9.08 -74.06 -0.67 10.02 15 Total: -1.00 -62.05 223.42 0.13 -61.92 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.04 Total: 29.24 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 1.39 Total: -29.56 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.21 Total: -50.53 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -3.45 Total: -57.51 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -62.05 0.13 -61.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223293669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.993 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds