Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09008 * 110.32598 * 61.06837 * 9 7 2 11 11 C 1.54493 * 110.36959 * 183.42306 * 9 7 2 12 12 C 1.54565 * 102.14638 * 134.18473 * 11 9 7 13 13 H 1.08998 * 110.44148 * 91.89518 * 12 11 9 14 14 C 1.53002 * 110.54694 * 214.35910 * 12 11 9 15 15 O 1.42895 * 109.47449 * 181.53762 * 14 12 11 16 16 O 1.45835 * 104.44631 * 333.15283 * 12 11 9 17 17 C 1.34063 * 109.90282 * 30.60516 * 16 12 11 18 18 O 1.20823 * 125.09603 * 159.17510 * 17 16 12 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.87096 * 252.35124 * 11 9 7 21 21 H 1.09001 * 110.86918 * 16.01977 * 11 9 7 22 22 H 1.09000 * 109.46863 * 301.53823 * 14 12 11 23 23 H 1.08996 * 109.47103 * 61.53471 * 14 12 11 24 24 H 0.96696 * 114.00419 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6297 -2.5816 -0.8864 11 6 2.2347 -3.6874 0.0900 12 6 1.5798 -4.5752 1.1726 13 1 0.9139 -5.3061 0.7140 14 6 2.6499 -5.2799 2.0088 15 8 2.0203 -6.1208 2.9776 16 8 0.8211 -3.6424 1.9980 17 6 0.4007 -2.6108 1.2521 18 8 -0.5192 -1.8797 1.5332 19 1 -0.4850 0.8400 0.0004 20 1 2.2903 -4.2142 -0.8626 21 1 3.2221 -3.3524 0.4078 22 1 3.2800 -5.8852 1.3570 23 1 3.2625 -4.5354 2.5171 24 1 2.6399 -6.5997 3.5448 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223458266.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = -131.874404 kcal Electronic energy + Delta-G solvation = -11620.096136 eV Core-core repulsion = 9305.869527 eV Total energy + Delta-G solvation = -2314.226610 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.68319 -36.75124 -35.53114 -33.41390 -31.42981 -29.01140 -25.03508 -22.89664 -21.00552 -19.72346 -17.27389 -16.51284 -16.15999 -15.39986 -14.78790 -14.32313 -13.99165 -13.18870 -12.75822 -12.26625 -11.84865 -11.55881 -11.20487 -10.93394 -10.62123 -10.55772 -9.95308 -9.86752 -9.45768 -9.36155 -8.62756 -8.34240 -6.02660 -4.16348 3.27755 3.35385 3.38207 3.72817 4.26723 4.30752 4.45225 5.19854 5.21562 5.36420 5.46389 5.66759 5.83933 5.86775 6.23345 6.40480 6.65178 7.28257 7.73543 7.77527 8.00657 8.19564 8.79944 9.27056 9.47128 10.99615 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.063633 B = 0.012395 C = 0.011401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.917048 B = 2258.490571 C = 2455.354274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.067 0.933 9 C -0.001 4.001 10 H 0.063 0.937 11 C -0.143 4.143 12 C 0.086 3.914 13 H 0.083 0.917 14 C 0.081 3.919 15 O -0.568 6.568 16 O -0.368 6.368 17 C 0.466 3.534 18 O -0.431 6.431 19 H 0.263 0.737 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -8.829 0.773 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.086 0.914 9 C -0.020 4.020 10 H 0.081 0.919 11 C -0.180 4.180 12 C 0.030 3.970 13 H 0.101 0.899 14 C 0.003 3.997 15 O -0.373 6.373 16 O -0.287 6.287 17 C 0.306 3.694 18 O -0.311 6.311 19 H 0.074 0.926 20 H 0.095 0.905 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.330 -8.133 0.840 9.760 hybrid contribution 1.023 0.736 0.196 1.275 sum 6.353 -7.396 1.036 9.805 Atomic orbital electron populations 1.70144 1.05631 1.26795 1.44441 1.25168 0.94992 0.99659 0.94586 0.86467 0.79993 0.83463 0.77729 1.19605 1.20757 1.20861 1.20743 0.92679 0.88504 1.55522 0.91436 1.19969 0.93199 0.94680 0.94184 0.91948 1.23027 1.00948 0.96916 0.97137 1.23428 0.92563 0.90632 0.90403 0.89941 1.22349 0.94018 0.92587 0.90720 1.86574 1.37615 1.62597 1.50480 1.86979 1.66957 1.34921 1.39851 1.24395 0.81847 0.77326 0.85862 1.90630 1.25956 1.40926 1.73562 0.92643 0.90525 0.90128 0.91993 0.92461 0.77949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.33 10.81 55.43 0.60 -24.73 14 2 C 0.06 1.82 5.30 -17.82 -0.09 1.72 14 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 14 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 14 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 14 7 C -0.54 -14.70 8.55 -34.44 -0.29 -15.00 14 8 H 0.07 1.76 7.50 -52.49 -0.39 1.37 14 9 C 0.00 -0.02 2.93 -91.83 -0.27 -0.28 14 10 H 0.06 1.63 8.14 -51.92 -0.42 1.21 14 11 C -0.14 -2.66 6.29 -25.13 -0.16 -2.82 14 12 C 0.09 1.57 3.82 -25.91 -0.10 1.48 14 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 14 14 C 0.08 1.16 6.71 37.16 0.25 1.41 14 15 O -0.57 -8.25 13.66 -35.89 -0.49 -8.74 14 16 O -0.37 -8.86 10.75 -40.28 -0.43 -9.29 14 17 C 0.47 12.70 7.73 36.31 0.28 12.98 14 18 O -0.43 -13.38 15.49 -18.41 -0.29 -13.66 14 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 14 20 H 0.08 1.20 8.14 -51.93 -0.42 0.77 14 21 H 0.08 1.45 7.39 -51.93 -0.38 1.06 14 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 14 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 14 24 H 0.37 3.25 9.12 45.56 0.42 3.67 14 LS Contribution 215.93 15.07 3.25 3.25 Total: -1.00 -34.46 215.93 -4.37 -38.83 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -1.61 Total: -1.59 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.39 Total: -0.51 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.60 Total: -24.73 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.21 Total: -31.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -34.46 -4.37 -38.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223458266.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.046 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds