Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09008 * 110.32598 * 61.06837 * 9 7 2 11 11 C 1.54493 * 110.36959 * 183.42306 * 9 7 2 12 12 C 1.54565 * 102.14638 * 134.18473 * 11 9 7 13 13 H 1.08998 * 110.44148 * 91.89518 * 12 11 9 14 14 C 1.53002 * 110.54694 * 214.35910 * 12 11 9 15 15 O 1.42895 * 109.47449 * 181.53762 * 14 12 11 16 16 O 1.45835 * 104.44631 * 333.15283 * 12 11 9 17 17 C 1.34063 * 109.90282 * 30.60516 * 16 12 11 18 18 O 1.20823 * 125.09603 * 159.17510 * 17 16 12 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.87096 * 252.35124 * 11 9 7 21 21 H 1.09001 * 110.86918 * 16.01977 * 11 9 7 22 22 H 1.09000 * 109.46863 * 301.53823 * 14 12 11 23 23 H 1.08996 * 109.47103 * 61.53471 * 14 12 11 24 24 H 0.96696 * 114.00419 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6297 -2.5816 -0.8864 11 6 2.2347 -3.6874 0.0900 12 6 1.5798 -4.5752 1.1726 13 1 0.9139 -5.3061 0.7140 14 6 2.6499 -5.2799 2.0088 15 8 2.0203 -6.1208 2.9776 16 8 0.8211 -3.6424 1.9980 17 6 0.4007 -2.6108 1.2521 18 8 -0.5192 -1.8797 1.5332 19 1 -0.4850 0.8400 0.0004 20 1 2.2903 -4.2142 -0.8626 21 1 3.2221 -3.3524 0.4078 22 1 3.2800 -5.8852 1.3570 23 1 3.2625 -4.5354 2.5171 24 1 2.6399 -6.5997 3.5448 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223458266.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = -158.790113 kcal Electronic energy + Delta-G solvation = -11621.263289 eV Core-core repulsion = 9305.869527 eV Total energy + Delta-G solvation = -2315.393762 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.51931 -38.32561 -37.16443 -35.42138 -33.24957 -30.64580 -26.87098 -24.59819 -22.58760 -21.64152 -18.55958 -18.44358 -17.67181 -17.38223 -16.73856 -16.11268 -15.35139 -14.74742 -14.65268 -14.16023 -13.67713 -12.97083 -12.87344 -12.75128 -12.42746 -12.38320 -11.74652 -11.38223 -11.14189 -10.94580 -10.72791 -10.44910 -8.14965 -6.34987 1.38920 1.41386 1.53368 1.69950 2.37791 2.59307 3.10840 3.25124 3.78766 3.95741 4.11464 4.27721 4.53292 4.59530 4.68400 4.94538 5.15570 5.38881 5.63836 6.00736 6.24049 6.71195 6.98155 7.19747 7.32709 8.87331 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.063633 B = 0.012395 C = 0.011401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.917048 B = 2258.490571 C = 2455.354274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.291 1.291 7 C -0.547 4.547 8 H 0.081 0.919 9 C -0.014 4.014 10 H 0.043 0.957 11 C -0.124 4.124 12 C 0.074 3.926 13 H 0.097 0.903 14 C 0.087 3.913 15 O -0.593 6.593 16 O -0.384 6.384 17 C 0.461 3.539 18 O -0.485 6.485 19 H 0.259 0.741 20 H 0.114 0.886 21 H 0.093 0.907 22 H 0.110 0.890 23 H 0.056 0.944 24 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -9.950 0.483 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.175 1.175 5 H -0.201 1.201 6 H -0.217 1.217 7 C -0.584 4.584 8 H 0.099 0.901 9 C -0.033 4.033 10 H 0.061 0.939 11 C -0.161 4.161 12 C 0.019 3.981 13 H 0.115 0.885 14 C 0.009 3.991 15 O -0.402 6.402 16 O -0.303 6.303 17 C 0.303 3.697 18 O -0.369 6.369 19 H 0.068 0.932 20 H 0.132 0.868 21 H 0.111 0.889 22 H 0.128 0.872 23 H 0.074 0.926 24 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.816 -9.310 0.552 12.169 hybrid contribution 0.290 0.953 0.307 1.042 sum 8.106 -8.357 0.858 11.674 Atomic orbital electron populations 1.70333 1.07548 1.27302 1.46306 1.26136 0.95748 1.03766 0.94371 0.85394 0.79547 0.78747 0.77348 1.17510 1.20066 1.21730 1.21247 0.93503 0.89469 1.54180 0.90060 1.20032 0.94131 0.96890 0.92279 0.93918 1.22948 0.99492 0.94399 0.99292 1.23978 0.93488 0.89827 0.90809 0.88536 1.22353 0.92397 0.93098 0.91220 1.86498 1.39484 1.62948 1.51253 1.86938 1.67518 1.34815 1.41018 1.24805 0.81208 0.77192 0.86471 1.90580 1.28240 1.43075 1.75029 0.93165 0.86791 0.88857 0.87184 0.92580 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.83 10.81 21.45 0.23 -54.60 14 2 C 0.00 0.20 5.30 84.65 0.45 0.65 14 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 14 4 H -0.25 -10.56 7.11 99.48 0.71 -9.86 14 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 14 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 14 7 C -0.55 -29.57 8.55 25.60 0.22 -29.35 14 8 H 0.08 4.06 7.50 -2.91 -0.02 4.04 14 9 C -0.01 -0.67 2.93 -11.58 -0.03 -0.71 14 10 H 0.04 2.28 8.14 -2.38 -0.02 2.26 14 11 C -0.12 -4.25 6.29 31.63 0.20 -4.05 14 12 C 0.07 2.50 3.82 31.13 0.12 2.62 14 13 H 0.10 2.99 8.14 -2.39 -0.02 2.97 14 14 C 0.09 2.13 6.71 71.98 0.48 2.61 14 15 O -0.59 -15.27 13.66 -148.35 -2.03 -17.30 14 16 O -0.38 -18.34 10.75 -48.42 -0.52 -18.86 14 17 C 0.46 25.60 7.73 71.44 0.55 26.15 14 18 O -0.49 -31.37 15.49 21.65 0.34 -31.04 14 19 H 0.26 15.48 8.31 -92.71 -0.77 14.71 14 20 H 0.11 3.06 8.14 -2.39 -0.02 3.04 14 21 H 0.09 2.97 7.39 -2.39 -0.02 2.96 14 22 H 0.11 1.71 8.14 -2.39 -0.02 1.69 14 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 14 24 H 0.40 5.51 9.12 -74.06 -0.68 4.84 14 Total: -1.00 -76.62 215.93 2.57 -74.05 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 0.54 Total: 3.72 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 1.99 Total: -2.07 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.23 Total: -54.60 kcal Atomic # 8 Polarization: -64.99 SS G_CDS: -2.21 Total: -67.20 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.62 2.57 -74.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223458266.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.742 kcal (2) G-P(sol) polarization free energy of solvation -76.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds