Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47000 * 270.23909 * 3 2 1 5 5 H 1.48492 * 109.47134 * 30.24080 * 3 2 1 6 6 H 1.48505 * 109.46897 * 150.24597 * 3 2 1 7 7 C 1.37882 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99700 * 3.76241 * 7 2 1 9 9 C 1.50691 * 120.00272 * 183.76244 * 7 2 1 10 10 H 1.08994 * 110.33106 * 333.18463 * 9 7 2 11 11 C 1.54680 * 110.36255 * 210.86624 * 9 7 2 12 12 C 1.54573 * 102.06182 * 256.33977 * 11 9 7 13 13 H 1.09003 * 110.43735 * 92.09007 * 12 11 9 14 14 C 1.53001 * 110.44048 * 214.48623 * 12 11 9 15 15 O 1.42893 * 109.46912 * 183.27756 * 14 12 11 16 16 O 1.45833 * 104.55097 * 333.29168 * 12 11 9 17 17 C 1.34060 * 109.90960 * 30.54495 * 16 12 11 18 18 O 1.20828 * 125.09833 * 159.20670 * 17 16 12 19 19 H 0.96999 * 119.99750 * 0.02562 * 1 2 3 20 20 H 1.08993 * 110.83859 * 138.23494 * 11 9 7 21 21 H 1.09003 * 110.97345 * 14.50655 * 11 9 7 22 22 H 1.08995 * 109.46998 * 303.28265 * 14 12 11 23 23 H 1.09005 * 109.46855 * 63.27880 * 14 12 11 24 24 H 0.96706 * 113.99777 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4915 2.0493 -1.4001 5 1 1.4492 2.6511 0.7051 6 1 3.5493 1.4386 0.6949 7 6 2.0046 -1.1941 0.0005 8 1 1.4663 -2.1284 -0.0604 9 6 3.5091 -1.1955 0.0862 10 1 3.9125 -0.2693 -0.3229 11 6 4.0898 -2.4160 -0.6659 12 6 4.4706 -3.3607 0.4968 13 1 3.6470 -4.0383 0.7220 14 6 5.7331 -4.1525 0.1504 15 8 6.0226 -5.0724 1.2048 16 8 4.7209 -2.4709 1.6248 17 6 3.9548 -1.3757 1.5211 18 8 3.6643 -0.6419 2.4361 19 1 -0.4850 0.8401 -0.0004 20 1 4.9714 -2.1334 -1.2411 21 1 3.3366 -2.8736 -1.3073 22 1 5.5742 -4.7017 -0.7776 23 1 6.5704 -3.4656 0.0273 24 1 6.8124 -5.6093 1.0526 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223458320.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -165.563221 kcal Electronic energy + Delta-G solvation = -11569.462707 eV Core-core repulsion = 9253.775240 eV Total energy + Delta-G solvation = -2315.687466 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.79803 -38.63855 -37.29702 -35.53939 -33.58683 -31.01076 -26.93342 -24.75882 -22.58998 -21.62802 -19.63382 -18.37358 -17.73301 -17.49397 -16.90669 -16.14442 -15.52381 -15.03235 -14.72873 -14.49831 -14.18131 -13.14609 -12.97656 -12.80617 -12.69493 -11.94485 -11.84326 -11.69005 -11.33928 -11.16078 -10.95130 -10.66499 -8.44444 -6.53121 1.20036 1.30772 1.38632 1.46171 2.27667 2.39366 2.83011 3.20636 3.63487 3.72397 4.04198 4.19419 4.43163 4.48450 4.64641 4.80651 5.02520 5.15730 5.36583 5.95220 6.06269 6.54633 6.69072 6.98503 7.15682 8.69900 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.064750 B = 0.012741 C = 0.012056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.326659 B = 2197.029434 C = 2321.958972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.244 1.244 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.520 4.520 8 H 0.052 0.948 9 C -0.048 4.048 10 H 0.086 0.914 11 C -0.123 4.123 12 C 0.076 3.924 13 H 0.082 0.918 14 C 0.088 3.912 15 O -0.595 6.595 16 O -0.368 6.368 17 C 0.468 3.532 18 O -0.516 6.516 19 H 0.272 0.728 20 H 0.117 0.883 21 H 0.105 0.895 22 H 0.109 0.891 23 H 0.072 0.928 24 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.021 -6.727 -5.499 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.168 1.168 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.068 4.068 10 H 0.103 0.897 11 C -0.160 4.160 12 C 0.021 3.979 13 H 0.100 0.900 14 C 0.010 3.990 15 O -0.405 6.405 16 O -0.286 6.286 17 C 0.312 3.688 18 O -0.404 6.404 19 H 0.081 0.919 20 H 0.135 0.865 21 H 0.124 0.876 22 H 0.127 0.873 23 H 0.090 0.910 24 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.342 -6.089 -4.676 14.535 hybrid contribution 0.035 0.620 0.203 0.653 sum 12.377 -5.470 -4.473 14.252 Atomic orbital electron populations 1.69995 1.08060 1.28691 1.49847 1.25922 0.95532 1.03105 0.92626 0.85903 0.79598 0.79047 0.79655 1.16789 1.21464 1.18441 1.20779 0.88743 0.94080 1.52070 0.92937 1.20607 0.97172 0.99972 0.89058 0.89667 1.22963 1.02922 0.93715 0.96396 1.23999 0.99782 0.90424 0.83697 0.90008 1.22382 0.94493 0.91399 0.90693 1.86513 1.51869 1.55568 1.46516 1.86927 1.58894 1.32445 1.50313 1.24943 0.71946 0.78435 0.93499 1.90509 1.53475 1.48073 1.48321 0.91917 0.86502 0.87629 0.87327 0.90991 0.74759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.96 21.45 0.30 -56.79 14 2 C 0.03 1.68 5.47 84.66 0.46 2.14 14 3 Si 0.93 44.83 27.09 68.60 1.86 46.69 14 4 H -0.24 -10.39 7.11 99.48 0.71 -9.69 14 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 14 6 H -0.26 -12.53 6.63 99.48 0.66 -11.87 14 7 C -0.52 -28.70 8.77 25.60 0.22 -28.48 14 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 14 9 C -0.05 -2.16 2.48 -11.51 -0.03 -2.19 14 10 H 0.09 3.68 5.41 -2.39 -0.01 3.67 14 11 C -0.12 -3.86 6.31 31.70 0.20 -3.66 14 12 C 0.08 2.45 3.82 31.13 0.12 2.57 14 13 H 0.08 2.80 8.14 -2.39 -0.02 2.78 14 14 C 0.09 1.86 6.70 71.98 0.48 2.34 14 15 O -0.60 -14.01 13.66 -148.88 -2.03 -16.04 14 16 O -0.37 -15.79 10.76 -48.87 -0.53 -16.32 14 17 C 0.47 23.21 7.88 71.44 0.56 23.78 14 18 O -0.52 -29.60 17.93 21.63 0.39 -29.21 14 19 H 0.27 15.63 8.31 -92.71 -0.77 14.86 14 20 H 0.12 2.65 7.93 -2.39 -0.02 2.64 14 21 H 0.11 3.21 7.80 -2.39 -0.02 3.19 14 22 H 0.11 1.46 8.14 -2.39 -0.02 1.44 14 23 H 0.07 1.32 8.14 -2.38 -0.02 1.30 14 24 H 0.40 4.58 9.12 -74.05 -0.68 3.90 14 Total: -1.00 -75.66 216.71 2.50 -73.16 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 0.50 Total: 2.02 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 2.02 Total: -3.50 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -2.17 Total: -61.57 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.86 Total: 46.69 kcal Total: -75.66 2.50 -73.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223458320.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.407 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds