Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48498 * 109.47046 * 94.89288 * 3 2 1 5 5 H 1.48503 * 109.46706 * 214.88802 * 3 2 1 6 6 H 1.48498 * 109.47049 * 334.88841 * 3 2 1 7 7 C 1.37872 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99731 * 356.04059 * 7 2 1 9 9 C 1.50696 * 120.00330 * 176.03645 * 7 2 1 10 10 H 1.08998 * 110.35825 * 25.11762 * 9 7 2 11 11 C 1.54467 * 110.40638 * 147.45551 * 9 7 2 12 12 C 1.54369 * 103.04695 * 119.16355 * 11 9 7 13 13 H 1.09002 * 110.31588 * 258.91677 * 12 11 9 14 14 C 1.52993 * 110.32400 * 136.81728 * 12 11 9 15 15 O 1.42896 * 109.47291 * 174.99456 * 14 12 11 16 16 O 1.45948 * 105.06810 * 17.81681 * 12 11 9 17 17 C 1.34752 * 108.47943 * 327.62891 * 16 12 11 18 18 O 1.20825 * 126.05463 * 213.30967 * 17 16 12 19 19 H 0.96998 * 120.00373 * 0.02562 * 1 2 3 20 20 H 1.09003 * 110.69636 * 237.55039 * 11 9 7 21 21 H 1.08996 * 110.70148 * 0.76486 * 11 9 7 22 22 H 1.09001 * 109.47464 * 294.99855 * 14 12 11 23 23 H 1.09004 * 109.47252 * 54.99631 * 14 12 11 24 24 H 0.96700 * 114.00360 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6000 1.9868 1.3950 5 1 3.4912 1.4723 -0.8008 6 1 1.3986 2.6803 -0.5942 7 6 2.0046 -1.1940 0.0005 8 1 1.4665 -2.1282 0.0655 9 6 3.5088 -1.1956 -0.0897 10 1 3.9124 -0.2561 0.2880 11 6 4.0943 -2.3886 0.6978 12 6 4.8380 -3.1927 -0.3900 13 1 4.2410 -4.0499 -0.7015 14 6 6.2004 -3.6560 0.1298 15 8 6.8225 -4.4944 -0.8458 16 8 5.0070 -2.2618 -1.5012 17 6 3.9520 -1.4237 -1.5205 18 8 3.4458 -0.9402 -2.5053 19 1 -0.4850 0.8400 -0.0004 20 1 4.7888 -2.0415 1.4628 21 1 3.2976 -2.9856 1.1414 22 1 6.8317 -2.7877 0.3184 23 1 6.0651 -4.2148 1.0559 24 1 7.6922 -4.8253 -0.5830 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223458371.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -135.648502 kcal Electronic energy + Delta-G solvation = -11550.211556 eV Core-core repulsion = 9235.821289 eV Total energy + Delta-G solvation = -2314.390267 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.02870 -37.05844 -35.95657 -33.54546 -31.72467 -29.50200 -25.18092 -23.15252 -20.99320 -19.87317 -17.66972 -17.19051 -15.93970 -15.85228 -15.30837 -14.43167 -13.97657 -13.49999 -13.04753 -12.76608 -12.28327 -11.74936 -11.40053 -11.10064 -10.92787 -10.13258 -10.07081 -10.00698 -9.79976 -9.53839 -9.21965 -8.59413 -6.23958 -4.28412 2.99418 3.22691 3.32436 3.36474 4.07621 4.19682 4.32065 4.91613 5.03670 5.20952 5.29864 5.49913 5.59955 5.69124 6.01429 6.16831 6.53687 6.71202 7.28052 7.60318 7.67520 8.25988 8.59734 8.76060 9.36145 10.87595 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.064434 B = 0.012523 C = 0.012072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.446961 B = 2235.406885 C = 2318.769705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.082 0.918 9 C -0.039 4.039 10 H 0.076 0.924 11 C -0.137 4.137 12 C 0.087 3.913 13 H 0.089 0.911 14 C 0.081 3.919 15 O -0.568 6.568 16 O -0.370 6.370 17 C 0.470 3.530 18 O -0.453 6.453 19 H 0.269 0.731 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -5.139 4.383 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.120 4.120 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.100 0.900 9 C -0.060 4.060 10 H 0.094 0.906 11 C -0.175 4.175 12 C 0.031 3.969 13 H 0.107 0.893 14 C 0.003 3.997 15 O -0.373 6.373 16 O -0.289 6.289 17 C 0.310 3.690 18 O -0.334 6.334 19 H 0.079 0.921 20 H 0.092 0.908 21 H 0.114 0.886 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.710 -4.655 3.430 12.171 hybrid contribution 0.797 0.788 0.346 1.173 sum 11.507 -3.867 3.776 12.713 Atomic orbital electron populations 1.69866 1.06362 1.27628 1.48017 1.25048 0.94810 0.99269 0.92863 0.86812 0.80784 0.83492 0.78433 1.19875 1.18920 1.20795 1.20575 0.86414 0.95336 1.52832 0.90021 1.20491 0.99740 0.96557 0.89172 0.90603 1.22888 0.99719 0.98124 0.96760 1.23472 0.95647 0.91685 0.86109 0.89284 1.22367 0.93144 0.93573 0.90611 1.86579 1.36596 1.68662 1.45464 1.87241 1.43959 1.46046 1.51692 1.24984 0.74897 0.75414 0.93666 1.90544 1.51616 1.49894 1.41328 0.92114 0.90767 0.88617 0.92536 0.91531 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.96 55.43 0.77 -25.87 14 2 C 0.09 2.44 5.47 -17.82 -0.10 2.35 14 3 Si 0.88 21.72 26.99 -169.99 -4.59 17.13 14 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 14 5 H -0.26 -6.58 6.84 56.52 0.39 -6.19 14 6 H -0.28 -6.98 7.11 56.52 0.40 -6.57 14 7 C -0.51 -14.18 8.65 -34.44 -0.30 -14.48 14 8 H 0.08 2.39 7.98 -52.48 -0.42 1.97 14 9 C -0.04 -0.91 2.60 -91.76 -0.24 -1.15 14 10 H 0.08 1.73 5.41 -51.93 -0.28 1.45 14 11 C -0.14 -2.40 6.38 -25.24 -0.16 -2.56 14 12 C 0.09 1.49 3.77 -26.02 -0.10 1.39 14 13 H 0.09 1.52 8.14 -51.93 -0.42 1.09 14 14 C 0.08 1.03 6.63 37.15 0.25 1.27 14 15 O -0.57 -7.52 13.66 -35.24 -0.48 -8.00 14 16 O -0.37 -8.08 10.87 -41.21 -0.45 -8.53 14 17 C 0.47 11.71 7.95 36.41 0.29 12.00 14 18 O -0.45 -12.84 17.80 -18.30 -0.33 -13.16 14 19 H 0.27 7.58 8.31 -40.82 -0.34 7.24 14 20 H 0.07 1.06 7.82 -51.93 -0.41 0.65 14 21 H 0.10 1.64 7.68 -51.93 -0.40 1.24 14 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 14 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 14 24 H 0.38 2.79 9.12 45.56 0.42 3.21 14 LS Contribution 216.54 15.07 3.26 3.26 Total: -1.00 -34.05 216.54 -3.67 -37.72 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -1.51 Total: -1.36 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.36 Total: -1.19 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.77 Total: -25.87 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.26 Total: -29.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.59 Total: 17.13 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -34.05 -3.67 -37.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223458371.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.927 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds