Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48498 * 109.47046 * 94.89288 * 3 2 1 5 5 H 1.48503 * 109.46706 * 214.88802 * 3 2 1 6 6 H 1.48498 * 109.47049 * 334.88841 * 3 2 1 7 7 C 1.37872 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99731 * 356.04059 * 7 2 1 9 9 C 1.50696 * 120.00330 * 176.03645 * 7 2 1 10 10 H 1.08998 * 110.35825 * 25.11762 * 9 7 2 11 11 C 1.54467 * 110.40638 * 147.45551 * 9 7 2 12 12 C 1.54369 * 103.04695 * 119.16355 * 11 9 7 13 13 H 1.09002 * 110.31588 * 258.91677 * 12 11 9 14 14 C 1.52993 * 110.32400 * 136.81728 * 12 11 9 15 15 O 1.42896 * 109.47291 * 174.99456 * 14 12 11 16 16 O 1.45948 * 105.06810 * 17.81681 * 12 11 9 17 17 C 1.34752 * 108.47943 * 327.62891 * 16 12 11 18 18 O 1.20825 * 126.05463 * 213.30967 * 17 16 12 19 19 H 0.96998 * 120.00373 * 0.02562 * 1 2 3 20 20 H 1.09003 * 110.69636 * 237.55039 * 11 9 7 21 21 H 1.08996 * 110.70148 * 0.76486 * 11 9 7 22 22 H 1.09001 * 109.47464 * 294.99855 * 14 12 11 23 23 H 1.09004 * 109.47252 * 54.99631 * 14 12 11 24 24 H 0.96700 * 114.00360 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6000 1.9868 1.3950 5 1 3.4912 1.4723 -0.8008 6 1 1.3986 2.6803 -0.5942 7 6 2.0046 -1.1940 0.0005 8 1 1.4665 -2.1282 0.0655 9 6 3.5088 -1.1956 -0.0897 10 1 3.9124 -0.2561 0.2880 11 6 4.0943 -2.3886 0.6978 12 6 4.8380 -3.1927 -0.3900 13 1 4.2410 -4.0499 -0.7015 14 6 6.2004 -3.6560 0.1298 15 8 6.8225 -4.4944 -0.8458 16 8 5.0070 -2.2618 -1.5012 17 6 3.9520 -1.4237 -1.5205 18 8 3.4458 -0.9402 -2.5053 19 1 -0.4850 0.8400 -0.0004 20 1 4.7888 -2.0415 1.4628 21 1 3.2976 -2.9856 1.1414 22 1 6.8317 -2.7877 0.3184 23 1 6.0651 -4.2148 1.0559 24 1 7.6922 -4.8253 -0.5830 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223458371.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -163.026120 kcal Electronic energy + Delta-G solvation = -11551.398739 eV Core-core repulsion = 9235.821289 eV Total energy + Delta-G solvation = -2315.577449 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.75813 -38.65297 -37.29237 -35.51202 -33.55145 -31.04096 -26.90731 -24.77266 -22.46827 -21.68845 -19.56828 -18.36509 -17.73712 -17.47713 -16.98840 -16.07044 -15.73372 -14.91150 -14.75498 -14.55180 -14.07294 -13.15609 -12.92293 -12.82641 -12.67680 -11.94007 -11.85955 -11.71466 -11.28610 -11.19631 -10.94480 -10.68006 -8.41587 -6.49697 1.09534 1.28030 1.35882 1.41572 2.27301 2.45997 2.85430 3.21039 3.64115 3.78112 4.00942 4.20863 4.41932 4.45283 4.64303 4.78755 5.05240 5.17700 5.34863 5.87060 6.09130 6.55424 6.67886 6.98512 7.18144 8.73578 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.064434 B = 0.012523 C = 0.012072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.446961 B = 2235.406885 C = 2318.769705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.239 1.239 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.049 0.951 9 C -0.048 4.048 10 H 0.088 0.912 11 C -0.122 4.122 12 C 0.075 3.925 13 H 0.084 0.916 14 C 0.087 3.913 15 O -0.595 6.595 16 O -0.376 6.376 17 C 0.468 3.532 18 O -0.502 6.502 19 H 0.271 0.729 20 H 0.120 0.880 21 H 0.097 0.903 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.960 -5.294 5.989 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.163 1.163 5 H -0.192 1.192 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.067 0.933 9 C -0.068 4.068 10 H 0.106 0.894 11 C -0.160 4.160 12 C 0.021 3.979 13 H 0.102 0.898 14 C 0.010 3.990 15 O -0.405 6.405 16 O -0.295 6.295 17 C 0.311 3.689 18 O -0.387 6.387 19 H 0.080 0.920 20 H 0.138 0.862 21 H 0.115 0.885 22 H 0.089 0.911 23 H 0.127 0.873 24 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 13.189 -4.852 5.081 14.943 hybrid contribution 0.067 0.683 -0.173 0.707 sum 13.255 -4.170 4.908 14.737 Atomic orbital electron populations 1.69998 1.08106 1.28624 1.50214 1.25940 0.95556 1.03110 0.92755 0.85898 0.79043 0.79017 0.80087 1.16272 1.19233 1.21196 1.20806 0.88940 0.93982 1.51708 0.93312 1.20588 0.97136 0.99805 0.89253 0.89441 1.22831 1.00525 0.95599 0.97035 1.23930 0.99070 0.90421 0.84525 0.89826 1.22385 0.90521 0.94777 0.91296 1.86501 1.38629 1.68890 1.46433 1.87232 1.42311 1.45993 1.53956 1.25216 0.74961 0.75118 0.93628 1.90508 1.53526 1.51830 1.42791 0.91986 0.86168 0.88451 0.91061 0.87305 0.74745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.96 21.45 0.30 -57.25 14 2 C 0.03 1.55 5.47 84.65 0.46 2.01 14 3 Si 0.94 44.29 26.99 68.60 1.85 46.15 14 4 H -0.24 -9.96 7.11 99.48 0.71 -9.25 14 5 H -0.27 -12.69 6.84 99.48 0.68 -12.01 14 6 H -0.29 -13.60 7.11 99.48 0.71 -12.90 14 7 C -0.52 -28.77 8.65 25.60 0.22 -28.55 14 8 H 0.05 2.94 7.98 -2.91 -0.02 2.92 14 9 C -0.05 -2.15 2.60 -11.53 -0.03 -2.18 14 10 H 0.09 3.75 5.41 -2.39 -0.01 3.73 14 11 C -0.12 -3.89 6.38 31.56 0.20 -3.69 14 12 C 0.08 2.37 3.77 31.06 0.12 2.49 14 13 H 0.08 2.70 8.14 -2.39 -0.02 2.68 14 14 C 0.09 1.82 6.63 71.98 0.48 2.29 14 15 O -0.60 -13.57 13.66 -148.97 -2.03 -15.60 14 16 O -0.38 -15.84 10.87 -56.08 -0.61 -16.45 14 17 C 0.47 23.16 7.95 71.50 0.57 23.73 14 18 O -0.50 -28.93 17.80 21.53 0.38 -28.55 14 19 H 0.27 15.64 8.31 -92.71 -0.77 14.87 14 20 H 0.12 2.75 7.82 -2.39 -0.02 2.74 14 21 H 0.10 3.09 7.68 -2.39 -0.02 3.07 14 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 14 23 H 0.11 1.41 8.14 -2.38 -0.02 1.39 14 24 H 0.40 4.36 9.12 -74.06 -0.68 3.68 14 Total: -1.00 -75.82 216.54 2.43 -73.39 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 0.52 Total: 2.22 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 2.02 Total: -3.90 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -2.26 Total: -60.61 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.85 Total: 46.15 kcal Total: -75.82 2.43 -73.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223458371.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.634 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds