Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48500 * 109.47662 * 240.00375 * 3 2 1 5 5 H 1.48507 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47032 * 120.00118 * 3 2 1 7 7 C 1.37878 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99965 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.32502 * 302.23356 * 9 7 2 11 11 C 1.54497 * 110.36610 * 180.02562 * 9 7 2 12 12 C 1.54571 * 102.14202 * 225.81376 * 11 9 7 13 13 H 1.08999 * 110.44182 * 268.10355 * 12 11 9 14 14 C 1.53004 * 110.43675 * 145.58897 * 12 11 9 15 15 O 1.42900 * 109.46747 * 174.99773 * 14 12 11 16 16 O 1.45827 * 104.44606 * 26.85000 * 12 11 9 17 17 C 1.34061 * 109.90753 * 329.39510 * 16 12 11 18 18 O 1.20824 * 125.09490 * 200.80089 * 17 16 12 19 19 H 0.97006 * 119.99739 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.86761 * 343.97721 * 11 9 7 21 21 H 1.09003 * 110.87008 * 107.65557 * 11 9 7 22 22 H 1.08993 * 109.47260 * 294.99757 * 14 12 11 23 23 H 1.09000 * 109.46932 * 55.00466 * 14 12 11 24 24 H 0.96708 * 113.99645 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.5891 -2.5550 0.8626 11 6 2.2363 -3.6891 -0.0015 12 6 1.6333 -4.6108 -1.0859 13 1 0.9453 -5.3272 -0.6371 14 6 2.7438 -5.3386 -1.8463 15 8 2.1630 -6.2695 -2.7618 16 8 0.9162 -3.7048 -1.9757 17 6 0.4614 -2.6505 -1.2838 18 8 -0.4429 -1.9288 -1.6320 19 1 -0.4850 0.8401 0.0004 20 1 3.2381 -3.3636 -0.2817 21 1 2.2453 -4.1856 0.9689 22 1 3.3429 -4.6133 -2.3967 23 1 3.3786 -5.8725 -1.1391 24 1 2.8102 -6.7683 -3.2791 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223458434.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -161.175896 kcal Electronic energy + Delta-G solvation = -11603.727220 eV Core-core repulsion = 9288.230002 eV Total energy + Delta-G solvation = -2315.497218 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.53794 -38.34676 -37.18133 -35.42922 -33.25987 -30.64837 -26.87340 -24.60945 -22.59833 -21.64586 -18.58574 -18.47403 -17.63694 -17.40484 -16.75298 -16.12657 -15.35822 -14.77385 -14.64460 -14.15084 -13.71600 -12.98520 -12.84127 -12.71401 -12.47692 -12.42248 -11.72340 -11.41354 -11.15471 -10.95579 -10.75828 -10.45073 -8.16786 -6.35771 1.39523 1.43370 1.51113 1.67344 2.37821 2.57337 3.10447 3.24858 3.77933 3.95051 4.11403 4.26884 4.53754 4.58736 4.67485 4.94238 5.15683 5.38454 5.63314 6.00329 6.22153 6.70757 6.97479 7.16064 7.32392 8.87006 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.064258 B = 0.012276 C = 0.011281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.638380 B = 2280.367608 C = 2481.376994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.548 4.548 8 H 0.081 0.919 9 C -0.013 4.013 10 H 0.045 0.955 11 C -0.124 4.124 12 C 0.074 3.926 13 H 0.097 0.903 14 C 0.087 3.913 15 O -0.593 6.593 16 O -0.383 6.383 17 C 0.463 3.537 18 O -0.491 6.491 19 H 0.260 0.740 20 H 0.094 0.906 21 H 0.114 0.886 22 H 0.056 0.944 23 H 0.111 0.889 24 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 -9.877 0.084 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.585 4.585 8 H 0.099 0.901 9 C -0.033 4.033 10 H 0.062 0.938 11 C -0.162 4.162 12 C 0.019 3.981 13 H 0.115 0.885 14 C 0.009 3.991 15 O -0.402 6.402 16 O -0.303 6.303 17 C 0.305 3.695 18 O -0.375 6.375 19 H 0.069 0.931 20 H 0.112 0.888 21 H 0.132 0.868 22 H 0.074 0.926 23 H 0.128 0.872 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.871 -9.245 -0.046 12.142 hybrid contribution 0.318 0.930 -0.314 1.032 sum 8.189 -8.314 -0.360 11.676 Atomic orbital electron populations 1.70275 1.07639 1.27566 1.46340 1.26125 0.95734 1.03773 0.94191 0.85490 0.78189 0.77939 0.79357 1.19675 1.21526 1.17920 1.21192 0.93479 0.89494 1.54352 0.90105 1.20018 0.94599 0.96827 0.91815 0.93768 1.22956 0.99821 0.94036 0.99341 1.23974 0.94297 0.90241 0.89581 0.88520 1.22342 0.92629 0.91352 0.92734 1.86494 1.39589 1.56786 1.57341 1.86928 1.68158 1.34544 1.40625 1.24836 0.80101 0.77155 0.87390 1.90565 1.28265 1.44745 1.73948 0.93067 0.88788 0.86812 0.92574 0.87174 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.86 11.15 21.45 0.24 -54.63 14 2 C 0.01 0.31 5.31 84.66 0.45 0.76 14 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 14 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 14 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 14 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 14 7 C -0.55 -29.62 8.52 25.60 0.22 -29.40 14 8 H 0.08 4.02 7.47 -2.91 -0.02 4.00 14 9 C -0.01 -0.64 2.87 -11.58 -0.03 -0.67 14 10 H 0.04 2.37 8.14 -2.39 -0.02 2.35 14 11 C -0.12 -4.25 6.29 31.64 0.20 -4.05 14 12 C 0.07 2.50 3.83 31.13 0.12 2.62 14 13 H 0.10 3.00 8.14 -2.39 -0.02 2.98 14 14 C 0.09 2.12 6.70 71.98 0.48 2.60 14 15 O -0.59 -15.07 13.66 -148.98 -2.03 -17.11 14 16 O -0.38 -18.24 10.76 -49.40 -0.53 -18.77 14 17 C 0.46 25.61 7.75 71.43 0.55 26.17 14 18 O -0.49 -31.63 15.82 21.64 0.34 -31.29 14 19 H 0.26 15.55 8.31 -92.70 -0.77 14.78 14 20 H 0.09 2.98 7.37 -2.39 -0.02 2.96 14 21 H 0.11 3.07 8.14 -2.39 -0.02 3.05 14 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 14 23 H 0.11 1.72 8.14 -2.39 -0.02 1.70 14 24 H 0.40 5.40 9.12 -74.05 -0.68 4.72 14 Total: -1.00 -76.30 216.50 2.57 -73.73 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 0.54 Total: 4.04 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 1.99 Total: -1.97 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.24 Total: -54.63 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -2.22 Total: -67.16 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.30 2.57 -73.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223458434.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.443 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds