Wall clock time and date at job start Mon Mar 30 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99899 * 2 1 4 4 H 1.09002 * 109.48241 * 310.00006 * 3 2 1 5 5 O 1.42901 * 109.48826 * 70.02813 * 3 2 1 6 6 C 1.42906 * 114.09713 * 58.83087 * 5 3 2 7 7 C 1.53102 * 109.41553 * 61.15748 * 6 5 3 8 8 C 1.53176 * 109.16158 * 302.39034 * 7 6 5 9 9 C 1.53098 * 109.47984 * 189.97548 * 3 2 1 10 10 H 1.08992 * 109.51912 * 177.64602 * 9 3 2 11 11 C 1.50701 * 109.51963 * 57.52227 * 9 3 2 12 12 H 1.07998 * 119.99879 * 240.00072 * 11 9 3 13 13 C 1.37877 * 120.00021 * 59.99864 * 11 9 3 14 14 N 1.31515 * 120.00408 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99996 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47498 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47397 * 120.00230 * 15 13 11 18 18 H 1.48507 * 109.47469 * 240.00078 * 15 13 11 19 19 H 1.09001 * 109.47015 * 59.99998 * 1 2 3 20 20 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47053 * 300.00257 * 1 2 3 22 22 H 1.08995 * 109.48312 * 301.17228 * 6 5 3 23 23 H 1.09000 * 109.49198 * 181.14198 * 6 5 3 24 24 H 1.08996 * 109.52210 * 182.48969 * 7 6 5 25 25 H 1.08994 * 109.57348 * 62.32503 * 7 6 5 26 26 H 1.09003 * 109.54246 * 297.11766 * 8 7 6 27 27 H 1.08994 * 109.54701 * 176.84636 * 8 7 6 28 28 H 0.96992 * 120.00430 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5547 1.9063 -0.7872 5 8 1.7838 1.9282 1.2661 6 6 2.3205 1.2055 2.3760 7 6 3.8393 1.0898 2.2214 8 6 4.1582 0.3995 0.8918 9 6 3.5165 1.1937 -0.2500 10 1 3.9537 2.1913 -0.2918 11 6 3.7587 0.4826 -1.5565 12 1 4.3188 -0.4406 -1.5730 13 6 3.2651 1.0106 -2.7306 14 7 2.5826 2.1346 -2.7105 15 14 3.5647 0.1288 -4.3498 16 1 4.3530 -1.1053 -4.1031 17 1 2.2623 -0.2301 -4.9664 18 1 4.3176 1.0211 -5.2676 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8813 0.2085 2.4074 23 1 2.0886 1.7341 3.3006 24 1 4.2454 0.5011 3.0440 25 1 4.2842 2.0848 2.2312 26 1 3.7568 -0.6139 0.9016 27 1 5.2382 0.3639 0.7491 28 1 2.2357 2.5063 -3.5365 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224954108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:43 Heat of formation + Delta-G solvation = -109.821977 kcal Electronic energy + Delta-G solvation = -12338.323723 eV Core-core repulsion = 10160.886473 eV Total energy + Delta-G solvation = -2177.437250 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.74576 -35.30434 -33.64097 -31.98714 -29.45679 -25.89430 -25.03015 -23.08197 -21.81898 -18.94988 -16.58544 -16.04203 -15.57282 -14.52185 -14.47913 -13.97082 -13.25536 -12.85418 -12.78329 -12.12926 -11.71014 -11.52572 -10.98810 -10.85116 -10.58549 -10.38313 -10.19740 -9.77548 -9.31143 -9.08027 -8.91832 -8.47800 -8.31811 -6.05106 -4.06515 3.30277 3.37922 3.42939 4.42240 4.84565 4.95195 5.31151 5.68675 5.76480 5.87930 6.10590 6.12667 6.23615 6.33647 6.43570 6.51040 6.68536 6.77868 6.99837 7.16267 7.43749 7.67392 7.77236 7.94572 8.27792 8.67433 8.93859 9.56988 11.03668 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.047914 B = 0.015824 C = 0.013843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.237065 B = 1769.057554 C = 2022.244377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.239 3.761 4 H 0.129 0.871 5 O -0.413 6.413 6 C 0.066 3.934 7 C -0.153 4.153 8 C -0.110 4.110 9 C 0.034 3.966 10 H 0.046 0.954 11 C -0.494 4.494 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.902 5.902 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 H 0.034 0.966 20 H 0.067 0.933 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -2.149 5.926 6.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C 0.145 3.855 4 H 0.146 0.854 5 O -0.335 6.335 6 C -0.011 4.011 7 C -0.191 4.191 8 C -0.148 4.148 9 C 0.015 3.985 10 H 0.064 0.936 11 C -0.532 4.532 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.542 5.542 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 H 0.052 0.948 20 H 0.086 0.914 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.694 -2.031 5.807 6.381 hybrid contribution -0.015 -0.431 -0.954 1.047 sum -1.709 -2.462 4.853 5.704 Atomic orbital electron populations 1.22513 0.83829 1.00625 0.99214 1.88014 1.17440 1.31135 1.93666 1.24307 0.97399 0.81240 0.82523 0.85389 1.88024 1.78650 1.49914 1.16913 1.22244 0.93001 0.96370 0.89443 1.22199 0.97092 1.00941 0.98883 1.21606 0.99780 0.99631 0.93760 1.19197 0.88994 0.96911 0.93360 0.93585 1.21072 1.33540 1.08088 0.90540 0.92192 1.24986 0.95032 0.94843 0.99300 1.69783 1.37308 1.19583 1.27558 0.86441 0.77913 0.79699 0.83394 1.19744 1.21045 1.21090 0.94751 0.91395 0.95113 0.93644 0.91036 0.92695 0.92116 0.92362 0.93136 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.88 101.05 1.10 1.80 15 2 O -0.38 -9.22 8.73 -59.04 -0.52 -9.74 15 3 C 0.24 6.00 2.80 37.21 0.10 6.10 15 4 H 0.13 3.57 6.09 -51.93 -0.32 3.25 15 5 O -0.41 -9.55 10.30 -59.04 -0.61 -10.15 15 6 C 0.07 1.27 6.68 37.21 0.25 1.52 15 7 C -0.15 -2.87 6.14 -26.59 -0.16 -3.03 15 8 C -0.11 -2.42 5.09 -26.55 -0.14 -2.55 15 9 C 0.03 0.88 2.14 -91.63 -0.20 0.68 15 10 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 11 C -0.49 -13.76 8.15 -34.44 -0.28 -14.05 15 12 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 15 14 N -0.90 -25.78 11.35 55.43 0.63 -25.15 15 15 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 15 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 15 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 19 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.03 0.56 7.89 -51.93 -0.41 0.15 15 22 H 0.05 0.87 7.56 -51.93 -0.39 0.47 15 23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.06 1.31 7.82 -51.93 -0.41 0.90 15 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 15 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 LS Contribution 230.83 15.07 3.48 3.48 Total: -1.00 -29.21 230.83 -5.48 -34.69 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.02 Total: -1.68 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 0.58 Total: -7.99 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.63 Total: -25.15 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -1.12 Total: -19.89 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.21 -5.48 -34.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.136 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds