Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99899 * 2 1 4 4 H 1.09002 * 109.48241 * 310.00006 * 3 2 1 5 5 O 1.42901 * 109.48826 * 70.02813 * 3 2 1 6 6 C 1.42906 * 114.09713 * 58.83087 * 5 3 2 7 7 C 1.53102 * 109.41553 * 61.15748 * 6 5 3 8 8 C 1.53176 * 109.16158 * 302.39034 * 7 6 5 9 9 C 1.53098 * 109.47984 * 189.97548 * 3 2 1 10 10 H 1.08992 * 109.51912 * 177.64602 * 9 3 2 11 11 C 1.50701 * 109.51963 * 57.52227 * 9 3 2 12 12 H 1.07998 * 119.99879 * 240.00072 * 11 9 3 13 13 C 1.37877 * 120.00021 * 59.99864 * 11 9 3 14 14 N 1.31515 * 120.00408 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99996 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47498 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47397 * 120.00230 * 15 13 11 18 18 H 1.48507 * 109.47469 * 240.00078 * 15 13 11 19 19 H 1.09001 * 109.47015 * 59.99998 * 1 2 3 20 20 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47053 * 300.00257 * 1 2 3 22 22 H 1.08995 * 109.48312 * 301.17228 * 6 5 3 23 23 H 1.09000 * 109.49198 * 181.14198 * 6 5 3 24 24 H 1.08996 * 109.52210 * 182.48969 * 7 6 5 25 25 H 1.08994 * 109.57348 * 62.32503 * 7 6 5 26 26 H 1.09003 * 109.54246 * 297.11766 * 8 7 6 27 27 H 1.08994 * 109.54701 * 176.84636 * 8 7 6 28 28 H 0.96992 * 120.00430 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5547 1.9063 -0.7872 5 8 1.7838 1.9282 1.2661 6 6 2.3205 1.2055 2.3760 7 6 3.8393 1.0898 2.2214 8 6 4.1582 0.3995 0.8918 9 6 3.5165 1.1937 -0.2500 10 1 3.9537 2.1913 -0.2918 11 6 3.7587 0.4826 -1.5565 12 1 4.3188 -0.4406 -1.5730 13 6 3.2651 1.0106 -2.7306 14 7 2.5826 2.1346 -2.7105 15 14 3.5647 0.1288 -4.3498 16 1 4.3530 -1.1053 -4.1031 17 1 2.2623 -0.2301 -4.9664 18 1 4.3176 1.0211 -5.2676 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8813 0.2085 2.4074 23 1 2.0886 1.7341 3.3006 24 1 4.2454 0.5011 3.0440 25 1 4.2842 2.0848 2.2312 26 1 3.7568 -0.6139 0.9016 27 1 5.2382 0.3639 0.7491 28 1 2.2357 2.5063 -3.5365 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224954108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = -128.650199 kcal Electronic energy + Delta-G solvation = -12339.140176 eV Core-core repulsion = 10160.886473 eV Total energy + Delta-G solvation = -2178.253703 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.53475 -37.05425 -35.61699 -33.84148 -31.28950 -27.60352 -26.94348 -24.89390 -23.59910 -20.73408 -18.62712 -17.80589 -17.42389 -16.47709 -16.26629 -15.66680 -14.88619 -14.60606 -14.52799 -13.99303 -13.52799 -13.22880 -12.84442 -12.62763 -12.32620 -12.29208 -11.92543 -11.68666 -11.07668 -10.92695 -10.77657 -10.52108 -10.17474 -8.15586 -6.24921 1.40034 1.41764 1.53729 2.41954 3.06542 3.13920 3.28871 4.14444 4.23124 4.32510 4.54708 4.56764 4.68795 4.72739 4.80797 4.94666 4.95364 5.08899 5.22119 5.33000 5.53579 5.69312 5.85777 5.99076 6.24293 6.75240 6.89289 7.41964 8.92026 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.047914 B = 0.015824 C = 0.013843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.237065 B = 1769.057554 C = 2022.244377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.400 6.400 3 C 0.253 3.747 4 H 0.094 0.906 5 O -0.427 6.427 6 C 0.058 3.942 7 C -0.147 4.147 8 C -0.106 4.106 9 C 0.026 3.974 10 H 0.014 0.986 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.278 1.278 19 H 0.024 0.976 20 H 0.099 0.901 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 -3.074 6.756 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.321 6.321 3 C 0.158 3.842 4 H 0.111 0.889 5 O -0.349 6.349 6 C -0.018 4.018 7 C -0.185 4.185 8 C -0.143 4.143 9 C 0.008 3.992 10 H 0.032 0.968 11 C -0.552 4.552 12 H 0.073 0.927 13 C -0.186 4.186 14 N -0.567 5.567 15 Si 0.785 3.215 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.204 1.204 19 H 0.043 0.957 20 H 0.118 0.882 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.126 0.874 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.710 -2.959 6.654 7.480 hybrid contribution -0.042 -0.138 -1.151 1.160 sum -1.753 -3.096 5.502 6.553 Atomic orbital electron populations 1.22728 0.81620 1.02781 0.99390 1.87955 1.19861 1.30403 1.93833 1.23685 0.96481 0.81107 0.82893 0.88920 1.87976 1.79224 1.50549 1.17141 1.22582 0.93167 0.96822 0.89209 1.22169 0.96995 1.01226 0.98078 1.21518 0.99616 0.98886 0.94306 1.19148 0.90088 0.95583 0.94411 0.96792 1.21340 1.33737 1.08124 0.91955 0.92747 1.25750 0.94760 0.95514 1.02537 1.69922 1.37808 1.20684 1.28330 0.85485 0.77890 0.78763 0.79410 1.19180 1.20661 1.20420 0.95732 0.88230 0.93778 0.93383 0.87368 0.88835 0.92092 0.93000 0.92689 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 10.88 113.37 1.23 2.43 15 2 O -0.40 -19.09 8.73 -126.21 -1.10 -20.19 15 3 C 0.25 12.81 2.80 72.01 0.20 13.01 15 4 H 0.09 5.35 6.09 -2.39 -0.01 5.33 15 5 O -0.43 -19.39 10.30 -126.21 -1.30 -20.69 15 6 C 0.06 2.08 6.68 72.02 0.48 2.56 15 7 C -0.15 -5.12 6.14 30.69 0.19 -4.93 15 8 C -0.11 -4.54 5.09 30.71 0.16 -4.39 15 9 C 0.03 1.38 2.14 -11.45 -0.02 1.36 15 10 H 0.01 0.81 8.14 -2.39 -0.02 0.79 15 11 C -0.51 -28.96 8.15 25.60 0.21 -28.75 15 12 H 0.05 3.04 7.74 -2.91 -0.02 3.02 15 13 C 0.01 0.67 5.30 84.65 0.45 1.12 15 14 N -0.93 -54.02 11.35 21.45 0.24 -53.78 15 15 Si 0.96 44.33 29.54 68.60 2.03 46.36 15 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 19 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 20 H 0.10 3.12 8.14 -2.39 -0.02 3.10 15 21 H 0.04 1.55 7.89 -2.38 -0.02 1.53 15 22 H 0.05 1.70 7.56 -2.39 -0.02 1.68 15 23 H 0.11 3.08 8.14 -2.39 -0.02 3.06 15 24 H 0.09 2.56 8.14 -2.39 -0.02 2.55 15 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.05 2.27 7.82 -2.39 -0.02 2.25 15 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 15 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 Total: -1.00 -62.58 230.83 3.88 -58.70 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.12 Total: 7.19 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 2.89 Total: -17.59 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.24 Total: -53.78 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -2.40 Total: -40.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.58 3.88 -58.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.954 kcal (2) G-P(sol) polarization free energy of solvation -62.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds