Wall clock time and date at job start Mon Mar 30 2020 02:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00037 * 2 1 4 4 H 1.09000 * 109.48147 * 55.02639 * 3 2 1 5 5 O 1.42905 * 109.48329 * 294.99941 * 3 2 1 6 6 C 1.42898 * 114.10155 * 178.86234 * 5 3 2 7 7 C 1.53090 * 109.41533 * 61.15446 * 6 5 3 8 8 C 1.53168 * 109.16565 * 302.39272 * 7 6 5 9 9 C 1.53095 * 109.48145 * 175.05638 * 3 2 1 10 10 H 1.09007 * 109.52185 * 57.62146 * 9 3 2 11 11 C 1.50700 * 109.52173 * 297.49807 * 9 3 2 12 12 H 1.08000 * 120.00187 * 324.86418 * 11 9 3 13 13 C 1.37879 * 120.00082 * 144.86845 * 11 9 3 14 14 N 1.31522 * 119.99932 * 5.21364 * 13 11 9 15 15 Si 1.86797 * 120.00152 * 185.21461 * 13 11 9 16 16 H 1.48500 * 109.47143 * 90.00033 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99761 * 15 13 11 18 18 H 1.48502 * 109.47057 * 330.00230 * 15 13 11 19 19 H 1.09003 * 109.47210 * 59.99906 * 1 2 3 20 20 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46951 * 300.00220 * 1 2 3 22 22 H 1.09001 * 109.48137 * 181.14101 * 6 5 3 23 23 H 1.09001 * 109.47797 * 301.17553 * 6 5 3 24 24 H 1.09005 * 109.52211 * 62.29994 * 7 6 5 25 25 H 1.09004 * 109.52389 * 182.48814 * 7 6 5 26 26 H 1.09005 * 109.54916 * 297.11771 * 8 7 6 27 27 H 1.09004 * 109.62213 * 176.88830 * 8 7 6 28 28 H 0.96993 * 119.99642 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.6200 1.8771 0.8420 5 8 1.6840 1.9724 -1.2210 6 6 2.1973 3.3027 -1.3144 7 6 3.7261 3.2645 -1.2428 8 6 4.1515 2.5864 0.0630 9 6 3.5315 1.1870 0.1244 10 1 3.9178 0.5802 -0.6947 11 6 3.8803 0.5388 1.4394 12 1 3.2803 0.7370 2.3152 13 6 4.9656 -0.3074 1.5244 14 7 5.7563 -0.4692 0.4860 15 14 5.3128 -1.2242 3.1145 16 1 4.6092 -2.5318 3.0958 17 1 6.7745 -1.4505 3.2463 18 1 4.8307 -0.4191 4.2654 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8887 3.7458 -2.2613 23 1 1.8097 3.9007 -0.4896 24 1 4.1164 2.7006 -2.0901 25 1 4.1176 4.2814 -1.2694 26 1 3.8036 3.1767 0.9108 27 1 5.2380 2.5055 0.0964 28 1 6.5200 -1.0642 0.5460 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224954160.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:44 Heat of formation + Delta-G solvation = -106.916894 kcal Electronic energy + Delta-G solvation = -12077.724297 eV Core-core repulsion = 9900.413021 eV Total energy + Delta-G solvation = -2177.311276 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.75990 -35.97223 -33.69366 -31.75232 -29.62852 -26.09335 -25.04960 -23.20128 -21.71523 -19.23905 -16.71863 -16.22934 -15.80322 -14.90006 -14.22510 -13.86590 -13.51150 -13.24177 -12.94788 -12.16725 -11.75336 -11.34891 -10.93775 -10.86609 -10.77103 -10.35079 -10.30413 -9.92930 -9.60815 -9.12741 -8.86951 -8.39049 -8.36276 -5.98676 -4.00491 3.35108 3.41155 3.43566 4.18736 4.48595 4.93660 5.32559 5.57794 5.67640 5.79838 5.83654 5.95241 6.00078 6.15611 6.20216 6.36700 6.41691 6.68408 6.96007 7.08523 7.44724 7.71822 7.82220 7.98392 8.20251 8.42948 9.05892 9.62140 11.11790 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.015454 C = 0.012140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.586961 B = 1811.412534 C = 2305.850061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.260 3.740 4 H 0.034 0.966 5 O -0.425 6.425 6 C 0.081 3.919 7 C -0.161 4.161 8 C -0.103 4.103 9 C 0.023 3.977 10 H 0.071 0.929 11 C -0.504 4.504 12 H 0.053 0.947 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.275 1.275 19 H 0.040 0.960 20 H 0.076 0.924 21 H 0.030 0.970 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 5.276 -1.370 8.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.264 6.264 3 C 0.166 3.834 4 H 0.051 0.949 5 O -0.347 6.347 6 C 0.004 3.996 7 C -0.199 4.199 8 C -0.142 4.142 9 C 0.005 3.995 10 H 0.089 0.911 11 C -0.542 4.542 12 H 0.071 0.929 13 C -0.136 4.136 14 N -0.529 5.529 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.200 1.200 19 H 0.059 0.941 20 H 0.094 0.906 21 H 0.049 0.951 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.918 4.908 -1.556 7.845 hybrid contribution 0.142 -0.199 1.040 1.069 sum -5.776 4.710 -0.516 7.471 Atomic orbital electron populations 1.22622 0.83325 1.01551 0.99308 1.88234 1.17846 1.26639 1.93682 1.23597 0.96175 0.80588 0.83088 0.94908 1.87631 1.76714 1.27914 1.42452 1.22301 0.93815 0.83060 1.00379 1.22337 0.95973 1.00432 1.01164 1.21733 1.01749 0.97231 0.93439 1.19275 0.86590 0.93534 1.00148 0.91097 1.20843 1.11934 1.27021 0.94420 0.92852 1.24939 0.95997 0.96200 0.96429 1.69949 1.15613 1.37515 1.29792 0.86582 0.77126 0.80483 0.83685 1.20531 1.21354 1.19962 0.94142 0.90561 0.95111 0.90091 0.94227 0.91471 0.92385 0.93925 0.91382 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.88 101.05 1.10 1.62 15 2 O -0.35 -8.31 10.32 -59.04 -0.61 -8.92 15 3 C 0.26 6.11 2.60 37.21 0.10 6.20 15 4 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 5 O -0.42 -9.15 10.03 -59.04 -0.59 -9.74 15 6 C 0.08 1.42 6.84 37.20 0.25 1.68 15 7 C -0.16 -2.99 6.14 -26.60 -0.16 -3.15 15 8 C -0.10 -2.32 5.29 -26.55 -0.14 -2.46 15 9 C 0.02 0.61 2.12 -91.63 -0.19 0.42 15 10 H 0.07 2.11 7.38 -51.93 -0.38 1.72 15 11 C -0.50 -14.22 8.03 -34.44 -0.28 -14.50 15 12 H 0.05 1.49 7.82 -52.49 -0.41 1.08 15 13 C 0.07 1.89 5.45 -17.82 -0.10 1.80 15 14 N -0.89 -26.42 12.84 55.43 0.71 -25.71 15 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 19 H 0.04 0.69 7.74 -51.93 -0.40 0.29 15 20 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.04 0.91 8.14 -51.93 -0.42 0.48 15 27 H 0.07 1.64 8.14 -51.93 -0.42 1.21 15 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 235.92 15.07 3.56 3.56 Total: -1.00 -30.70 235.92 -5.51 -36.21 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.13 Total: -3.81 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 0.58 Total: -8.40 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.71 Total: -25.71 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.20 Total: -18.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.70 -5.51 -36.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954160.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.707 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds