Wall clock time and date at job start Mon Mar 30 2020 02:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00037 * 2 1 4 4 H 1.09000 * 109.48147 * 55.02639 * 3 2 1 5 5 O 1.42905 * 109.48329 * 294.99941 * 3 2 1 6 6 C 1.42898 * 114.10155 * 178.86234 * 5 3 2 7 7 C 1.53090 * 109.41533 * 61.15446 * 6 5 3 8 8 C 1.53168 * 109.16565 * 302.39272 * 7 6 5 9 9 C 1.53095 * 109.48145 * 175.05638 * 3 2 1 10 10 H 1.09007 * 109.52185 * 57.62146 * 9 3 2 11 11 C 1.50700 * 109.52173 * 297.49807 * 9 3 2 12 12 H 1.08000 * 120.00187 * 324.86418 * 11 9 3 13 13 C 1.37879 * 120.00082 * 144.86845 * 11 9 3 14 14 N 1.31522 * 119.99932 * 5.21364 * 13 11 9 15 15 Si 1.86797 * 120.00152 * 185.21461 * 13 11 9 16 16 H 1.48500 * 109.47143 * 90.00033 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99761 * 15 13 11 18 18 H 1.48502 * 109.47057 * 330.00230 * 15 13 11 19 19 H 1.09003 * 109.47210 * 59.99906 * 1 2 3 20 20 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46951 * 300.00220 * 1 2 3 22 22 H 1.09001 * 109.48137 * 181.14101 * 6 5 3 23 23 H 1.09001 * 109.47797 * 301.17553 * 6 5 3 24 24 H 1.09005 * 109.52211 * 62.29994 * 7 6 5 25 25 H 1.09004 * 109.52389 * 182.48814 * 7 6 5 26 26 H 1.09005 * 109.54916 * 297.11771 * 8 7 6 27 27 H 1.09004 * 109.62213 * 176.88830 * 8 7 6 28 28 H 0.96993 * 119.99642 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.6200 1.8771 0.8420 5 8 1.6840 1.9724 -1.2210 6 6 2.1973 3.3027 -1.3144 7 6 3.7261 3.2645 -1.2428 8 6 4.1515 2.5864 0.0630 9 6 3.5315 1.1870 0.1244 10 1 3.9178 0.5802 -0.6947 11 6 3.8803 0.5388 1.4394 12 1 3.2803 0.7370 2.3152 13 6 4.9656 -0.3074 1.5244 14 7 5.7563 -0.4692 0.4860 15 14 5.3128 -1.2242 3.1145 16 1 4.6092 -2.5318 3.0958 17 1 6.7745 -1.4505 3.2463 18 1 4.8307 -0.4191 4.2654 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8887 3.7458 -2.2613 23 1 1.8097 3.9007 -0.4896 24 1 4.1164 2.7006 -2.0901 25 1 4.1176 4.2814 -1.2694 26 1 3.8036 3.1767 0.9108 27 1 5.2380 2.5055 0.0964 28 1 6.5200 -1.0642 0.5460 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224954160.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:44 Heat of formation + Delta-G solvation = -127.607639 kcal Electronic energy + Delta-G solvation = -12078.621515 eV Core-core repulsion = 9900.413021 eV Total energy + Delta-G solvation = -2178.208494 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45193 -37.63586 -35.65222 -33.62623 -31.40520 -27.64830 -26.96629 -24.93833 -23.46006 -21.00499 -18.72893 -17.99417 -17.46848 -16.78937 -16.03317 -15.46761 -15.10582 -14.81293 -14.59221 -14.06872 -13.50473 -13.06528 -12.80786 -12.75661 -12.53250 -12.10949 -11.99612 -11.56400 -11.47449 -11.02118 -10.65434 -10.50506 -10.15139 -8.14371 -6.22530 1.40112 1.42998 1.51915 2.41758 2.62728 3.15440 3.37298 4.11165 4.13342 4.21456 4.42288 4.44545 4.57513 4.63394 4.70192 4.81499 4.90738 5.04564 5.24630 5.27098 5.57861 5.65138 5.81757 6.09822 6.42028 6.52711 6.90729 7.42744 8.96386 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.015454 C = 0.012140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.586961 B = 1811.412534 C = 2305.850061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.387 6.387 3 C 0.269 3.731 4 H 0.044 0.956 5 O -0.436 6.436 6 C 0.073 3.927 7 C -0.154 4.154 8 C -0.099 4.099 9 C 0.017 3.983 10 H 0.022 0.978 11 C -0.518 4.518 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.958 3.042 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.263 1.263 19 H 0.048 0.952 20 H 0.097 0.903 21 H 0.047 0.953 22 H 0.118 0.882 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 6.330 -0.831 9.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.306 6.306 3 C 0.174 3.826 4 H 0.061 0.939 5 O -0.358 6.358 6 C -0.003 4.003 7 C -0.192 4.192 8 C -0.137 4.137 9 C -0.002 4.002 10 H 0.040 0.960 11 C -0.556 4.556 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.784 3.216 16 H -0.204 1.204 17 H -0.208 1.208 18 H -0.187 1.187 19 H 0.067 0.933 20 H 0.116 0.884 21 H 0.066 0.934 22 H 0.136 0.864 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.080 5.982 -1.017 9.324 hybrid contribution 0.446 -0.492 0.825 1.059 sum -6.634 5.490 -0.192 8.613 Atomic orbital electron populations 1.22876 0.80345 1.03444 1.00503 1.88157 1.21214 1.27278 1.93994 1.23224 0.94226 0.80933 0.84241 0.93894 1.87624 1.76802 1.29875 1.41516 1.22676 0.92670 0.81600 1.03317 1.22273 0.97232 1.01751 0.97903 1.21566 0.99781 0.95949 0.96436 1.19255 0.89083 0.94529 0.97350 0.95991 1.21192 1.11750 1.27317 0.95309 0.92961 1.25776 0.95955 0.97234 0.99795 1.70087 1.16221 1.38445 1.31909 0.85556 0.77123 0.79048 0.79921 1.20398 1.20753 1.18717 0.93293 0.88449 0.93439 0.86376 0.92024 0.93064 0.88556 0.92680 0.94157 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 10.88 113.37 1.23 2.07 15 2 O -0.39 -18.52 10.32 -126.21 -1.30 -19.83 15 3 C 0.27 12.45 2.60 72.01 0.19 12.64 15 4 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 5 O -0.44 -18.04 10.03 -126.21 -1.27 -19.30 15 6 C 0.07 2.32 6.84 72.01 0.49 2.81 15 7 C -0.15 -5.41 6.14 30.68 0.19 -5.22 15 8 C -0.10 -4.44 5.29 30.71 0.16 -4.28 15 9 C 0.02 0.90 2.12 -11.45 -0.02 0.87 15 10 H 0.02 1.35 7.38 -2.38 -0.02 1.34 15 11 C -0.52 -29.61 8.03 25.60 0.21 -29.40 15 12 H 0.05 2.92 7.82 -2.91 -0.02 2.90 15 13 C 0.01 0.61 5.45 84.65 0.46 1.08 15 14 N -0.93 -56.65 12.84 21.45 0.28 -56.38 15 15 Si 0.96 45.17 29.54 68.60 2.03 47.20 15 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 15 19 H 0.05 1.57 7.74 -2.39 -0.02 1.56 15 20 H 0.10 2.86 8.14 -2.39 -0.02 2.84 15 21 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.12 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.06 1.72 8.14 -2.39 -0.02 1.71 15 24 H 0.05 1.95 8.14 -2.38 -0.02 1.93 15 25 H 0.10 2.66 8.14 -2.39 -0.02 2.64 15 26 H 0.05 2.29 8.14 -2.38 -0.02 2.27 15 27 H 0.04 1.98 8.14 -2.38 -0.02 1.96 15 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 Total: -1.00 -67.35 235.92 3.76 -63.60 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.12 Total: 4.14 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 2.91 Total: -19.43 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.28 Total: -56.38 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.57 Total: -39.13 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -67.35 3.76 -63.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954160.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.012 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds