Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00221 * 2 1 4 4 H 1.08996 * 109.48291 * 309.98225 * 3 2 1 5 5 O 1.42900 * 109.47660 * 70.00448 * 3 2 1 6 6 C 1.42908 * 114.09905 * 181.15107 * 5 3 2 7 7 C 1.53091 * 109.41684 * 298.84368 * 6 5 3 8 8 C 1.53177 * 109.16113 * 57.60032 * 7 6 5 9 9 C 1.53170 * 109.11459 * 302.97713 * 8 7 6 10 10 H 1.09003 * 109.52494 * 297.12415 * 9 8 7 11 11 C 1.50699 * 109.52522 * 176.93069 * 9 8 7 12 12 H 1.07999 * 119.99845 * 275.06618 * 11 9 8 13 13 C 1.37882 * 120.00100 * 95.06061 * 11 9 8 14 14 N 1.31506 * 119.99615 * 5.10078 * 13 11 9 15 15 Si 1.86796 * 120.00255 * 185.10190 * 13 11 9 16 16 H 1.48507 * 109.46955 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47224 * 119.99912 * 15 13 11 18 18 H 1.48501 * 109.47118 * 240.00153 * 15 13 11 19 19 H 1.08999 * 109.46676 * 299.99824 * 1 2 3 20 20 H 1.08999 * 109.47013 * 59.99537 * 1 2 3 21 21 H 1.09002 * 109.46847 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.48466 * 178.85536 * 6 5 3 23 23 H 1.09000 * 109.47497 * 58.82035 * 6 5 3 24 24 H 1.09000 * 109.51830 * 297.70184 * 7 6 5 25 25 H 1.08990 * 109.52257 * 177.51558 * 7 6 5 26 26 H 1.09000 * 109.54169 * 62.89614 * 8 7 6 27 27 H 1.09000 * 109.53866 * 183.06797 * 8 7 6 28 28 H 0.96999 * 120.00312 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.5550 1.9061 -0.7874 5 8 1.7832 1.9281 1.2660 6 6 2.3041 3.2552 1.3654 7 6 3.8222 3.2220 1.1708 8 6 4.1413 2.5911 -0.1881 9 6 3.5183 1.1932 -0.2507 10 1 3.9681 0.5593 0.5136 11 6 3.7622 0.5936 -1.6116 12 1 3.0914 0.8166 -2.4280 13 6 4.8419 -0.2397 -1.8144 14 7 5.6006 -0.5916 -0.7995 15 14 5.2269 -0.8687 -3.5306 16 1 4.2292 -0.3311 -4.4902 17 1 6.5866 -0.4230 -3.9277 18 1 5.1705 -2.3526 -3.5381 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 2.0725 3.6639 2.3489 23 1 1.8526 3.8813 0.5958 24 1 4.2781 2.6290 1.9637 25 1 4.2157 4.2379 1.2023 26 1 3.7277 3.2106 -0.9838 27 1 5.2217 2.5145 -0.3098 28 1 6.3604 -1.1775 -0.9421 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224954199.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -106.537741 kcal Electronic energy + Delta-G solvation = -12072.738521 eV Core-core repulsion = 9895.443687 eV Total energy + Delta-G solvation = -2177.294835 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.74074 -35.97497 -33.68940 -31.76694 -29.61854 -26.08785 -25.04407 -23.22386 -21.71540 -19.24762 -16.70839 -16.22227 -15.79293 -14.89972 -14.23874 -13.88054 -13.51107 -13.22274 -12.97124 -12.15673 -11.73406 -11.37810 -11.01446 -10.83759 -10.76107 -10.33537 -10.30622 -9.93878 -9.58138 -9.11615 -8.88248 -8.43459 -8.34305 -5.98483 -4.00204 3.32603 3.40243 3.44254 4.17762 4.47788 4.96895 5.31531 5.57215 5.67009 5.79458 5.83429 5.94795 6.00024 6.15122 6.19151 6.35160 6.40674 6.66945 6.94870 7.06064 7.40692 7.74282 7.81853 7.97373 8.22711 8.43034 9.06785 9.61805 11.11907 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040286 B = 0.015309 C = 0.012184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.869394 B = 1828.521447 C = 2297.634962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.345 6.345 3 C 0.260 3.740 4 H 0.033 0.967 5 O -0.424 6.424 6 C 0.081 3.919 7 C -0.161 4.161 8 C -0.104 4.104 9 C 0.021 3.979 10 H 0.075 0.925 11 C -0.504 4.504 12 H 0.053 0.947 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.038 0.962 20 H 0.031 0.969 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 5.600 1.765 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.262 6.262 3 C 0.165 3.835 4 H 0.051 0.949 5 O -0.347 6.347 6 C 0.004 3.996 7 C -0.199 4.199 8 C -0.143 4.143 9 C 0.002 3.998 10 H 0.093 0.907 11 C -0.542 4.542 12 H 0.072 0.928 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.520 5.213 1.940 7.836 hybrid contribution 0.161 -0.031 -1.117 1.129 sum -5.359 5.182 0.823 7.500 Atomic orbital electron populations 1.22648 0.83344 1.01620 0.99209 1.88226 1.17788 1.26690 1.93535 1.23612 0.96709 0.81067 0.82068 0.94943 1.87641 1.79495 1.29048 1.38474 1.22298 0.93638 0.83212 1.00416 1.22332 0.96241 1.00498 1.00823 1.21757 1.01720 0.97668 0.93116 1.19335 0.87175 0.93509 0.99793 0.90718 1.20869 1.10483 1.28268 0.94560 0.92828 1.24939 0.96451 0.95399 0.96769 1.69944 1.17573 1.35475 1.29818 0.86535 0.78060 0.78661 0.84704 1.19779 1.21047 1.20974 0.94304 0.95042 0.90505 0.90083 0.94247 0.91447 0.92369 0.93837 0.91681 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.88 101.05 1.10 1.62 15 2 O -0.34 -8.34 10.31 -59.04 -0.61 -8.95 15 3 C 0.26 6.12 2.57 37.31 0.10 6.22 15 4 H 0.03 0.75 8.09 -51.93 -0.42 0.33 15 5 O -0.42 -9.20 10.25 -59.04 -0.60 -9.80 15 6 C 0.08 1.42 6.84 37.20 0.25 1.68 15 7 C -0.16 -2.97 6.14 -26.59 -0.16 -3.13 15 8 C -0.10 -2.33 5.29 -26.55 -0.14 -2.47 15 9 C 0.02 0.54 2.19 -91.54 -0.20 0.34 15 10 H 0.07 2.22 7.25 -51.93 -0.38 1.85 15 11 C -0.50 -14.20 8.04 -34.44 -0.28 -14.48 15 12 H 0.05 1.50 7.82 -52.49 -0.41 1.09 15 13 C 0.07 1.89 5.45 -17.82 -0.10 1.80 15 14 N -0.89 -26.48 12.77 55.43 0.71 -25.77 15 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 15 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 19 H 0.04 0.66 7.89 -51.93 -0.41 0.25 15 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 26 H 0.04 0.92 8.14 -51.93 -0.42 0.49 15 27 H 0.06 1.54 8.14 -51.93 -0.42 1.12 15 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 236.09 15.07 3.56 3.56 Total: -1.00 -30.86 236.09 -5.53 -36.39 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.13 Total: -3.72 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.57 Total: -8.42 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.71 Total: -25.77 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -1.21 Total: -18.75 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.86 -5.53 -36.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954199.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.149 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds