Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00221 * 2 1 4 4 H 1.08996 * 109.48291 * 309.98225 * 3 2 1 5 5 O 1.42900 * 109.47660 * 70.00448 * 3 2 1 6 6 C 1.42908 * 114.09905 * 181.15107 * 5 3 2 7 7 C 1.53091 * 109.41684 * 298.84368 * 6 5 3 8 8 C 1.53177 * 109.16113 * 57.60032 * 7 6 5 9 9 C 1.53170 * 109.11459 * 302.97713 * 8 7 6 10 10 H 1.09003 * 109.52494 * 297.12415 * 9 8 7 11 11 C 1.50699 * 109.52522 * 176.93069 * 9 8 7 12 12 H 1.07999 * 119.99845 * 275.06618 * 11 9 8 13 13 C 1.37882 * 120.00100 * 95.06061 * 11 9 8 14 14 N 1.31506 * 119.99615 * 5.10078 * 13 11 9 15 15 Si 1.86796 * 120.00255 * 185.10190 * 13 11 9 16 16 H 1.48507 * 109.46955 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47224 * 119.99912 * 15 13 11 18 18 H 1.48501 * 109.47118 * 240.00153 * 15 13 11 19 19 H 1.08999 * 109.46676 * 299.99824 * 1 2 3 20 20 H 1.08999 * 109.47013 * 59.99537 * 1 2 3 21 21 H 1.09002 * 109.46847 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.48466 * 178.85536 * 6 5 3 23 23 H 1.09000 * 109.47497 * 58.82035 * 6 5 3 24 24 H 1.09000 * 109.51830 * 297.70184 * 7 6 5 25 25 H 1.08990 * 109.52257 * 177.51558 * 7 6 5 26 26 H 1.09000 * 109.54169 * 62.89614 * 8 7 6 27 27 H 1.09000 * 109.53866 * 183.06797 * 8 7 6 28 28 H 0.96999 * 120.00312 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.5550 1.9061 -0.7874 5 8 1.7832 1.9281 1.2660 6 6 2.3041 3.2552 1.3654 7 6 3.8222 3.2220 1.1708 8 6 4.1413 2.5911 -0.1881 9 6 3.5183 1.1932 -0.2507 10 1 3.9681 0.5593 0.5136 11 6 3.7622 0.5936 -1.6116 12 1 3.0914 0.8166 -2.4280 13 6 4.8419 -0.2397 -1.8144 14 7 5.6006 -0.5916 -0.7995 15 14 5.2269 -0.8687 -3.5306 16 1 4.2292 -0.3311 -4.4902 17 1 6.5866 -0.4230 -3.9277 18 1 5.1705 -2.3526 -3.5381 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 2.0725 3.6639 2.3489 23 1 1.8526 3.8813 0.5958 24 1 4.2781 2.6290 1.9637 25 1 4.2157 4.2379 1.2023 26 1 3.7277 3.2106 -0.9838 27 1 5.2217 2.5145 -0.3098 28 1 6.3604 -1.1775 -0.9421 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224954199.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -127.412866 kcal Electronic energy + Delta-G solvation = -12073.643735 eV Core-core repulsion = 9895.443687 eV Total energy + Delta-G solvation = -2178.200048 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.43434 -37.64527 -35.64608 -33.63713 -31.39374 -27.65438 -26.95322 -24.96303 -23.45822 -21.00683 -18.72265 -17.98776 -17.46081 -16.78825 -16.04368 -15.48305 -15.09966 -14.80545 -14.61079 -14.05015 -13.48397 -13.09075 -12.89473 -12.70666 -12.52050 -12.10591 -11.97909 -11.55053 -11.46173 -10.99460 -10.66261 -10.56222 -10.13510 -8.13881 -6.22222 1.40195 1.41301 1.53554 2.41604 2.61643 3.15558 3.39425 4.10821 4.12552 4.21291 4.41924 4.43645 4.56742 4.62292 4.69384 4.80604 4.90839 5.04045 5.24884 5.26471 5.56512 5.65913 5.81763 6.09084 6.41101 6.55555 6.91876 7.42684 8.97072 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.040286 B = 0.015309 C = 0.012184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.869394 B = 1828.521447 C = 2297.634962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.387 6.387 3 C 0.268 3.732 4 H 0.044 0.956 5 O -0.436 6.436 6 C 0.073 3.927 7 C -0.154 4.154 8 C -0.100 4.100 9 C 0.014 3.986 10 H 0.025 0.975 11 C -0.517 4.517 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.959 3.041 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.283 1.283 19 H 0.048 0.952 20 H 0.047 0.953 21 H 0.097 0.903 22 H 0.118 0.882 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 6.825 1.260 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.306 6.306 3 C 0.173 3.827 4 H 0.061 0.939 5 O -0.359 6.359 6 C -0.003 4.003 7 C -0.192 4.192 8 C -0.138 4.138 9 C -0.006 4.006 10 H 0.043 0.957 11 C -0.555 4.555 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.568 5.568 15 Si 0.784 3.216 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.209 1.209 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.116 0.884 22 H 0.136 0.864 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.589 6.458 1.438 9.338 hybrid contribution 0.434 -0.385 -0.906 1.076 sum -6.155 6.074 0.533 8.664 Atomic orbital electron populations 1.22901 0.80353 1.03498 1.00438 1.88147 1.21182 1.27424 1.93861 1.23258 0.94834 0.81345 0.83234 0.93869 1.87631 1.79679 1.31132 1.37455 1.22679 0.92563 0.81719 1.03347 1.22271 0.97459 1.01929 0.97496 1.21595 0.99832 0.96180 0.96243 1.19323 0.89445 0.94539 0.97244 0.95669 1.21213 1.10356 1.28360 0.95540 0.92966 1.25787 0.96423 0.95865 1.00706 1.70089 1.18239 1.36483 1.32000 0.85490 0.78224 0.77867 0.79972 1.18742 1.20200 1.20879 0.93285 0.93465 0.88439 0.86422 0.92010 0.93067 0.88460 0.92482 0.94206 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 10.88 113.37 1.23 2.07 15 2 O -0.39 -18.70 10.31 -126.21 -1.30 -20.00 15 3 C 0.27 12.49 2.57 72.08 0.19 12.67 15 4 H 0.04 1.91 8.09 -2.39 -0.02 1.89 15 5 O -0.44 -18.22 10.25 -126.21 -1.29 -19.52 15 6 C 0.07 2.31 6.84 72.01 0.49 2.80 15 7 C -0.15 -5.37 6.14 30.68 0.19 -5.18 15 8 C -0.10 -4.45 5.29 30.71 0.16 -4.29 15 9 C 0.01 0.72 2.19 -11.39 -0.02 0.70 15 10 H 0.02 1.56 7.25 -2.39 -0.02 1.54 15 11 C -0.52 -29.52 8.04 25.60 0.21 -29.31 15 12 H 0.05 2.92 7.82 -2.91 -0.02 2.90 15 13 C 0.01 0.59 5.45 84.66 0.46 1.05 15 14 N -0.93 -56.93 12.77 21.45 0.27 -56.66 15 15 Si 0.96 44.98 29.54 68.60 2.03 47.00 15 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 19 H 0.05 1.58 7.89 -2.39 -0.02 1.56 15 20 H 0.05 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 22 H 0.12 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 Total: -1.00 -67.79 236.09 3.73 -64.06 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.12 Total: 4.60 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 2.91 Total: -19.48 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.27 Total: -56.66 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -2.59 Total: -39.52 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.79 3.73 -64.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954199.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.354 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds