Wall clock time and date at job start Mon Mar 30 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.48646 * 54.99990 * 3 2 1 5 5 O 1.42904 * 109.48100 * 294.97574 * 3 2 1 6 6 C 1.42927 * 114.08762 * 301.16531 * 5 3 2 7 7 C 1.53096 * 109.41969 * 298.84728 * 6 5 3 8 8 C 1.53179 * 109.15949 * 57.60908 * 7 6 5 9 9 C 1.53100 * 109.47995 * 175.02499 * 3 2 1 10 10 H 1.08998 * 109.51764 * 182.28138 * 9 3 2 11 11 C 1.50693 * 109.51822 * 302.46553 * 9 3 2 12 12 H 1.08004 * 120.00013 * 119.99925 * 11 9 3 13 13 C 1.37872 * 120.00722 * 299.99958 * 11 9 3 14 14 N 1.31518 * 119.99730 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00536 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46834 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47151 * 119.99892 * 15 13 11 18 18 H 1.48494 * 109.47368 * 239.99893 * 15 13 11 19 19 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 20 20 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47594 * 178.86788 * 6 5 3 23 23 H 1.08997 * 109.48423 * 58.83619 * 6 5 3 24 24 H 1.08996 * 109.52809 * 297.70671 * 7 6 5 25 25 H 1.08999 * 109.57253 * 177.54309 * 7 6 5 26 26 H 1.09003 * 109.54262 * 183.14568 * 8 7 6 27 27 H 1.09003 * 109.54392 * 62.88281 * 8 7 6 28 28 H 0.97001 * 120.00588 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.6196 1.8773 0.8417 5 8 1.6843 1.9722 -1.2212 6 6 2.1301 1.2899 -2.3953 7 6 3.6562 1.1709 -2.3664 8 6 4.0790 0.4346 -1.0914 9 6 3.5314 1.1871 0.1252 10 1 3.9721 2.1833 0.1660 11 6 3.8759 0.4308 1.3822 12 1 4.4343 -0.4917 1.3216 13 6 3.4782 0.9163 2.6098 14 7 2.7978 2.0394 2.6838 15 14 3.9058 -0.0209 4.1681 16 1 4.6710 -1.2438 3.8159 17 1 4.7303 0.8405 5.0534 18 1 2.6568 -0.4040 4.8739 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8260 1.8506 -3.2791 23 1 1.6885 0.2939 -2.4268 24 1 4.0995 2.1666 -2.3758 25 1 3.9956 0.6128 -3.2389 26 1 5.1669 0.3955 -1.0367 27 1 3.6766 -0.5784 -1.1050 28 1 2.5177 2.3808 3.5474 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224954232.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:47 Heat of formation + Delta-G solvation = -109.680861 kcal Electronic energy + Delta-G solvation = -12340.276679 eV Core-core repulsion = 10162.845548 eV Total energy + Delta-G solvation = -2177.431131 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.77197 -35.27965 -33.64978 -31.98955 -29.46960 -25.89951 -25.02754 -23.07802 -21.82415 -18.96027 -16.58832 -16.05006 -15.56945 -14.52815 -14.48833 -13.98078 -13.24433 -12.88019 -12.75244 -12.12901 -11.71320 -11.52813 -10.98884 -10.86351 -10.59228 -10.38765 -10.20264 -9.77284 -9.33029 -9.08294 -8.89513 -8.47008 -8.33230 -6.04682 -4.06099 3.30704 3.38286 3.43277 4.42560 4.81808 4.96779 5.31633 5.67806 5.75574 5.87217 6.09891 6.12029 6.21986 6.32731 6.43041 6.50191 6.68063 6.77903 6.99846 7.16304 7.44335 7.66846 7.74694 7.95029 8.27515 8.68242 8.94182 9.57424 11.04096 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.048149 B = 0.015756 C = 0.013817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.386460 B = 1776.665709 C = 2026.018436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.239 3.761 4 H 0.129 0.871 5 O -0.414 6.414 6 C 0.066 3.934 7 C -0.153 4.153 8 C -0.110 4.110 9 C 0.034 3.966 10 H 0.046 0.954 11 C -0.495 4.495 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.902 5.902 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 H 0.031 0.969 20 H 0.033 0.967 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 -1.934 -5.997 6.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.146 3.854 4 H 0.146 0.854 5 O -0.335 6.335 6 C -0.011 4.011 7 C -0.191 4.191 8 C -0.148 4.148 9 C 0.016 3.984 10 H 0.064 0.936 11 C -0.533 4.533 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.542 5.542 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.148 -1.819 -5.856 6.497 hybrid contribution 0.060 -0.463 0.911 1.024 sum -2.088 -2.283 -4.945 5.833 Atomic orbital electron populations 1.22498 0.83895 1.00602 0.99236 1.88039 1.17353 1.31078 1.93777 1.24329 0.96514 0.80511 0.84060 0.85399 1.88032 1.79764 1.50056 1.15662 1.22254 0.93731 0.96789 0.88333 1.22198 0.97043 1.00925 0.98947 1.21611 0.99602 0.99434 0.94147 1.19193 0.89080 0.97109 0.93053 0.93585 1.21064 1.34271 1.07872 0.90067 0.92198 1.24985 0.95010 0.94890 0.99251 1.69786 1.38958 1.20473 1.24986 0.86437 0.78090 0.79915 0.82983 1.19748 1.21096 1.21041 0.95037 0.94854 0.91387 0.91011 0.93668 0.92108 0.92679 0.93124 0.92359 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.88 101.05 1.10 1.78 15 2 O -0.38 -9.22 8.74 -59.04 -0.52 -9.74 15 3 C 0.24 6.01 2.84 37.21 0.11 6.12 15 4 H 0.13 3.58 6.14 -51.93 -0.32 3.26 15 5 O -0.41 -9.52 10.08 -59.04 -0.60 -10.11 15 6 C 0.07 1.26 6.68 37.21 0.25 1.51 15 7 C -0.15 -2.86 6.14 -26.59 -0.16 -3.02 15 8 C -0.11 -2.42 5.09 -26.55 -0.14 -2.56 15 9 C 0.03 0.88 2.14 -91.63 -0.20 0.69 15 10 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 11 C -0.49 -13.79 8.15 -34.45 -0.28 -14.07 15 12 H 0.06 1.67 7.74 -52.48 -0.41 1.26 15 13 C 0.06 1.64 5.30 -17.82 -0.09 1.54 15 14 N -0.90 -25.82 11.35 55.43 0.63 -25.19 15 15 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 19 H 0.03 0.57 7.74 -51.93 -0.40 0.17 15 20 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.04 0.86 7.56 -51.93 -0.39 0.46 15 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.06 1.31 7.82 -51.93 -0.41 0.90 15 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 230.56 15.07 3.47 3.47 Total: -1.00 -29.24 230.56 -5.47 -34.71 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.02 Total: -1.71 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 0.58 Total: -8.01 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.63 Total: -25.19 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.11 Total: -19.85 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.24 -5.47 -34.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224954232.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.975 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds