Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.27536 * 2 1 4 4 C 1.54944 * 110.38934 * 237.85477 * 2 1 3 5 5 C 1.55462 * 100.98612 * 204.64583 * 4 2 1 6 6 C 1.54381 * 102.18297 * 34.03788 * 5 4 2 7 7 H 1.08996 * 109.82769 * 98.30324 * 6 5 4 8 8 C 1.53005 * 109.83080 * 219.18083 * 6 5 4 9 9 H 1.08998 * 109.47061 * 294.82346 * 8 6 5 10 10 O 1.42905 * 109.46812 * 54.81492 * 8 6 5 11 11 C 1.50695 * 109.47088 * 174.81587 * 8 6 5 12 12 H 1.07995 * 120.00496 * 0.02562 * 11 8 6 13 13 C 1.37880 * 119.99572 * 180.02562 * 11 8 6 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 O 1.43238 * 107.66803 * 338.74226 * 6 5 4 20 20 H 1.09006 * 109.46791 * 299.36255 * 1 2 3 21 21 H 1.09000 * 109.47252 * 59.36008 * 1 2 3 22 22 H 1.08998 * 109.47114 * 179.36613 * 1 2 3 23 23 H 1.08999 * 111.12778 * 322.50609 * 4 2 1 24 24 H 1.08995 * 111.12809 * 86.67932 * 4 2 1 25 25 H 1.09004 * 110.83070 * 275.89065 * 5 4 2 26 26 H 1.08993 * 110.92510 * 152.22595 * 5 4 2 27 27 H 0.96696 * 114.00036 * 60.00212 * 10 8 6 28 28 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4733 -1.2022 -0.7171 6 6 3.2126 -1.4393 0.7860 7 1 3.0657 -2.5031 0.9724 8 6 4.3991 -0.9279 1.6056 9 1 5.2831 -1.5223 1.3749 10 8 4.6477 0.4413 1.2805 11 6 4.0832 -1.0462 3.0743 12 1 3.1317 -1.4465 3.3916 13 6 5.0092 -0.6434 4.0131 14 7 6.1678 -0.1555 3.6269 15 14 4.6181 -0.7906 5.8338 16 1 4.3607 -2.2137 6.1713 17 1 3.4132 0.0184 6.1483 18 1 5.7696 -0.2942 6.6292 19 8 2.0286 -0.7156 1.1413 20 1 -0.3633 0.5039 0.8957 21 1 -0.3634 0.5237 -0.8842 22 1 -0.3633 -1.0276 -0.0114 23 1 1.4506 -1.6422 -1.4502 24 1 2.1515 -0.1202 -2.0989 25 1 4.2005 -0.4036 -0.8634 26 1 3.8011 -2.1208 -1.2035 27 1 3.9019 1.0299 1.4603 28 1 6.3711 -0.0794 2.6814 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227098156.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = -115.504296 kcal Electronic energy + Delta-G solvation = -12049.711902 eV Core-core repulsion = 9872.028248 eV Total energy + Delta-G solvation = -2177.683654 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.13521 -35.46418 -32.03476 -31.75348 -31.08293 -27.46999 -24.57374 -22.14291 -20.91594 -19.97917 -17.11685 -16.45612 -15.58671 -14.76044 -13.70534 -13.62211 -13.40454 -13.16455 -12.65001 -12.01900 -11.91556 -11.79258 -11.18593 -10.83151 -10.70501 -10.45893 -10.39343 -10.06230 -9.97934 -9.78425 -8.55071 -8.35809 -7.87069 -6.24395 -4.04252 3.49056 3.51415 3.70230 4.36883 4.61424 4.97326 5.08462 5.35928 5.44588 5.54240 5.69057 5.73934 5.89297 5.95350 6.02248 6.13002 6.29603 6.31358 6.45056 6.58621 6.72127 7.40192 7.82961 8.18547 8.52225 8.97967 9.14615 9.78479 11.15346 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056756 B = 0.012530 C = 0.011170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.225106 B = 2234.016375 C = 2506.048741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.063 0.937 4 C -0.151 4.151 5 C -0.154 4.154 6 C 0.064 3.936 7 H 0.067 0.933 8 C 0.203 3.797 9 H 0.055 0.945 10 O -0.581 6.581 11 C -0.631 4.631 12 H 0.053 0.947 13 C 0.030 3.970 14 N -0.899 5.899 15 Si 1.067 2.933 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.284 1.284 19 O -0.358 6.358 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.355 0.645 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 -0.668 -7.778 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.081 0.919 4 C -0.188 4.188 5 C -0.191 4.191 6 C 0.006 3.994 7 H 0.085 0.915 8 C 0.146 3.854 9 H 0.072 0.928 10 O -0.385 6.385 11 C -0.669 4.669 12 H 0.071 0.929 13 C -0.178 4.178 14 N -0.535 5.535 15 Si 0.896 3.104 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.209 1.209 19 O -0.278 6.278 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.200 0.800 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.064 -0.651 -6.254 9.457 hybrid contribution -1.134 -0.195 -1.599 1.970 sum -8.198 -0.846 -7.852 11.383 Atomic orbital electron populations 1.21859 0.94696 1.02189 1.01745 1.22875 0.94029 0.95887 0.85889 0.91865 1.23290 0.97040 1.00232 0.98257 1.23207 0.97228 1.02241 0.96434 1.23477 0.87521 0.95700 0.92690 0.91508 1.19901 0.91260 0.80478 0.93766 0.92793 1.86400 1.43518 1.20412 1.88194 1.22369 1.04575 1.48464 0.91476 0.92886 1.25793 0.93233 0.93050 1.05707 1.70652 1.22279 1.40015 1.20553 0.83593 0.75568 0.76288 0.74948 1.21552 1.21479 1.20926 1.88540 1.42175 1.64738 1.32348 0.92038 0.92013 0.92401 0.91200 0.90926 0.89635 0.91322 0.79955 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.63 37.16 0.36 -1.66 15 2 C 0.07 1.19 4.07 -25.70 -0.10 1.08 15 3 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 4 C -0.15 -2.22 6.58 -24.40 -0.16 -2.38 15 5 C -0.15 -2.68 6.44 -24.70 -0.16 -2.84 15 6 C 0.06 1.38 3.36 -26.01 -0.09 1.29 15 7 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 8 C 0.20 5.27 2.36 -27.88 -0.07 5.20 15 9 H 0.05 1.49 8.01 -51.93 -0.42 1.07 15 10 O -0.58 -14.95 10.91 -40.84 -0.45 -15.40 15 11 C -0.63 -18.35 8.39 -34.44 -0.29 -18.64 15 12 H 0.05 1.57 7.61 -52.49 -0.40 1.17 15 13 C 0.03 0.88 5.40 -17.82 -0.10 0.78 15 14 N -0.90 -28.18 13.53 55.43 0.75 -27.43 15 15 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 15 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 19 O -0.36 -7.75 9.77 -40.84 -0.40 -8.15 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.07 0.95 8.06 -51.93 -0.42 0.53 15 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 25 H 0.09 1.59 7.04 -51.93 -0.37 1.22 15 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.36 8.66 8.69 45.56 0.40 9.05 15 28 H 0.28 8.92 6.47 -40.82 -0.26 8.65 15 LS Contribution 234.52 15.07 3.53 3.53 Total: -1.00 -31.84 234.52 -5.47 -37.31 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.22 Total: 6.32 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.60 Total: -17.16 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.75 Total: -27.43 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.84 Total: -23.55 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.84 -5.47 -37.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227098156.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.192 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds