Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47502 * 2 1 4 4 C 1.42897 * 113.99802 * 179.97438 * 3 2 1 5 5 C 1.53781 * 113.61431 * 209.99628 * 4 3 2 6 6 C 1.53774 * 87.08242 * 220.02399 * 5 4 3 7 7 O 1.42903 * 113.61673 * 139.98515 * 6 5 4 8 8 C 1.50700 * 113.61408 * 270.79775 * 6 5 4 9 9 H 1.08001 * 120.00063 * 358.47345 * 8 6 5 10 10 C 1.37879 * 120.00266 * 178.47449 * 8 6 5 11 11 N 1.31516 * 119.99607 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00197 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46939 * 89.99574 * 12 10 8 14 14 H 1.48497 * 109.47148 * 209.99518 * 12 10 8 15 15 H 1.48499 * 109.46831 * 329.99986 * 12 10 8 16 16 C 1.53776 * 87.08537 * 25.43454 * 6 5 4 17 17 H 1.08999 * 109.46682 * 59.99659 * 1 2 3 18 18 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.46886 * 300.00561 * 1 2 3 20 20 H 1.08998 * 109.47359 * 239.99297 * 2 1 3 21 21 H 1.09006 * 109.46949 * 120.00106 * 2 1 3 22 22 H 1.08990 * 112.91209 * 341.25221 * 4 3 2 23 23 H 1.08995 * 113.61579 * 105.46623 * 5 4 3 24 24 H 1.09008 * 113.69141 * 334.58279 * 5 4 3 25 25 H 0.96700 * 114.00311 * 179.97438 * 7 6 5 26 26 H 0.97004 * 119.99826 * 179.97438 * 11 10 8 27 27 H 1.08994 * 113.61624 * 89.11363 * 16 6 5 28 28 H 1.08999 * 113.61419 * 220.02613 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.9485 2.7251 0.7051 6 6 4.9901 2.8311 -0.4213 7 8 5.2158 4.1695 -0.8683 8 6 6.2685 2.0870 -0.1332 9 1 6.3917 1.5687 0.8063 10 6 7.2810 2.0679 -1.0689 11 7 7.1308 2.6987 -2.2131 12 14 8.8654 1.1450 -0.7121 13 1 8.7388 -0.2570 -1.1851 14 1 9.9927 1.8056 -1.4178 15 1 9.1240 1.1527 0.7502 16 6 4.0030 2.0460 -1.3011 17 1 -0.3632 0.5139 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 3.9288 0.5458 0.3236 23 1 4.3836 2.5319 1.6855 24 1 3.2310 3.5456 0.7148 25 1 5.8703 4.2426 -1.5764 26 1 7.8432 2.6856 -2.8713 27 1 3.2995 2.6800 -1.8407 28 1 4.4823 1.3044 -1.9401 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233730913.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = -86.390576 kcal Electronic energy + Delta-G solvation = -11741.299857 eV Core-core repulsion = 9564.878669 eV Total energy + Delta-G solvation = -2176.421188 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.60347 -36.22535 -32.96883 -32.05760 -30.43025 -25.85519 -24.56183 -22.59217 -21.95697 -18.61990 -17.08864 -15.97020 -15.22981 -14.94624 -14.64671 -13.81136 -13.02932 -12.74375 -12.56985 -11.92267 -11.64481 -11.46195 -11.21682 -10.98907 -10.77216 -10.60737 -10.33990 -10.24925 -9.79174 -9.13882 -8.64187 -8.57945 -8.01689 -6.25268 -4.34228 3.19859 3.27330 3.31054 4.26243 4.28296 5.02418 5.27738 5.44569 5.62640 5.75511 5.84072 5.88918 5.92033 6.14605 6.27028 6.39093 6.51642 6.80919 6.91982 6.96068 7.31694 7.60032 7.78624 7.92514 8.17233 8.70915 9.35680 9.67955 10.82394 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.054638 B = 0.010981 C = 0.010031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.339782 B = 2549.330786 C = 2790.701406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.068 3.932 5 C -0.128 4.128 6 C 0.246 3.754 7 O -0.588 6.588 8 C -0.527 4.527 9 H 0.066 0.934 10 C 0.069 3.931 11 N -0.896 5.896 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.283 1.283 15 H -0.272 1.272 16 C -0.169 4.169 17 H 0.060 0.940 18 H 0.064 0.936 19 H 0.059 0.941 20 H 0.044 0.956 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.386 0.614 26 H 0.270 0.730 27 H 0.064 0.936 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 -4.887 2.340 8.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.011 3.989 5 C -0.166 4.166 6 C 0.206 3.794 7 O -0.399 6.399 8 C -0.565 4.565 9 H 0.084 0.916 10 C -0.133 4.133 11 N -0.537 5.537 12 Si 0.731 3.269 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.196 1.196 16 C -0.207 4.207 17 H 0.079 0.921 18 H 0.083 0.917 19 H 0.078 0.922 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.240 0.760 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.648 -4.550 2.620 8.471 hybrid contribution 1.430 -0.952 -0.393 1.762 sum -5.218 -5.502 2.227 7.903 Atomic orbital electron populations 1.21737 0.94618 1.01518 1.02783 1.22380 0.94805 0.85293 0.99601 1.87897 1.22580 1.24997 1.94850 1.23447 0.78414 0.97842 0.99240 1.23369 0.98374 0.96151 0.98675 1.19507 0.90290 0.80762 0.88883 1.86057 1.65778 1.28573 1.59506 1.21415 0.99743 1.32438 1.02924 0.91606 1.25065 0.98873 0.94914 0.94435 1.69449 1.34020 1.43037 1.07175 0.86403 0.82200 0.79639 0.78670 1.20448 1.20906 1.19627 1.24107 0.99290 1.00698 0.96628 0.92088 0.91736 0.92181 0.93812 0.93986 0.89933 0.92073 0.90768 0.75974 0.91990 0.91765 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.49 15 2 C 0.06 0.88 6.50 37.16 0.24 1.12 15 3 O -0.38 -7.66 10.35 -35.23 -0.36 -8.03 15 4 C 0.07 1.47 4.03 -25.91 -0.10 1.36 15 5 C -0.13 -2.97 7.32 -25.92 -0.19 -3.16 15 6 C 0.25 6.48 1.43 -90.97 -0.13 6.35 15 7 O -0.59 -16.40 13.48 -35.23 -0.47 -16.88 15 8 C -0.53 -14.38 8.30 -34.44 -0.29 -14.66 15 9 H 0.07 1.75 7.81 -52.49 -0.41 1.34 15 10 C 0.07 1.85 5.39 -17.82 -0.10 1.76 15 11 N -0.90 -24.56 11.19 55.43 0.62 -23.94 15 12 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 15 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 16 C -0.17 -4.12 7.32 -25.92 -0.19 -4.31 15 17 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 18 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.08 1.73 7.87 -51.93 -0.41 1.32 15 23 H 0.06 1.34 8.09 -51.93 -0.42 0.92 15 24 H 0.07 1.70 8.14 -51.92 -0.42 1.28 15 25 H 0.39 10.89 6.56 45.56 0.30 11.18 15 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 27 H 0.06 1.57 8.14 -51.93 -0.42 1.15 15 28 H 0.06 1.55 8.10 -51.93 -0.42 1.13 15 LS Contribution 240.19 15.07 3.62 3.62 Total: -1.00 -28.57 240.19 -5.45 -34.02 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.45 Total: 8.67 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -0.37 Total: -13.04 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.62 Total: -23.94 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.84 Total: -24.91 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.57 -5.45 -34.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233730913.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.372 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds