Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47502 * 2 1 4 4 C 1.42897 * 113.99802 * 179.97438 * 3 2 1 5 5 C 1.53781 * 113.61431 * 209.99628 * 4 3 2 6 6 C 1.53774 * 87.08242 * 220.02399 * 5 4 3 7 7 O 1.42903 * 113.61673 * 139.98515 * 6 5 4 8 8 C 1.50700 * 113.61408 * 270.79775 * 6 5 4 9 9 H 1.08001 * 120.00063 * 358.47345 * 8 6 5 10 10 C 1.37879 * 120.00266 * 178.47449 * 8 6 5 11 11 N 1.31516 * 119.99607 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00197 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46939 * 89.99574 * 12 10 8 14 14 H 1.48497 * 109.47148 * 209.99518 * 12 10 8 15 15 H 1.48499 * 109.46831 * 329.99986 * 12 10 8 16 16 C 1.53776 * 87.08537 * 25.43454 * 6 5 4 17 17 H 1.08999 * 109.46682 * 59.99659 * 1 2 3 18 18 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.46886 * 300.00561 * 1 2 3 20 20 H 1.08998 * 109.47359 * 239.99297 * 2 1 3 21 21 H 1.09006 * 109.46949 * 120.00106 * 2 1 3 22 22 H 1.08990 * 112.91209 * 341.25221 * 4 3 2 23 23 H 1.08995 * 113.61579 * 105.46623 * 5 4 3 24 24 H 1.09008 * 113.69141 * 334.58279 * 5 4 3 25 25 H 0.96700 * 114.00311 * 179.97438 * 7 6 5 26 26 H 0.97004 * 119.99826 * 179.97438 * 11 10 8 27 27 H 1.08994 * 113.61624 * 89.11363 * 16 6 5 28 28 H 1.08999 * 113.61419 * 220.02613 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.9485 2.7251 0.7051 6 6 4.9901 2.8311 -0.4213 7 8 5.2158 4.1695 -0.8683 8 6 6.2685 2.0870 -0.1332 9 1 6.3917 1.5687 0.8063 10 6 7.2810 2.0679 -1.0689 11 7 7.1308 2.6987 -2.2131 12 14 8.8654 1.1450 -0.7121 13 1 8.7388 -0.2570 -1.1851 14 1 9.9927 1.8056 -1.4178 15 1 9.1240 1.1527 0.7502 16 6 4.0030 2.0460 -1.3011 17 1 -0.3632 0.5139 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 3.9288 0.5458 0.3236 23 1 4.3836 2.5319 1.6855 24 1 3.2310 3.5456 0.7148 25 1 5.8703 4.2426 -1.5764 26 1 7.8432 2.6856 -2.8713 27 1 3.2995 2.6800 -1.8407 28 1 4.4823 1.3044 -1.9401 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233730913.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = -106.404032 kcal Electronic energy + Delta-G solvation = -11742.167706 eV Core-core repulsion = 9564.878669 eV Total energy + Delta-G solvation = -2177.289037 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.40856 -37.91162 -34.88115 -34.14633 -31.68465 -27.88771 -26.47290 -24.06869 -23.51443 -20.55871 -19.06121 -17.65240 -17.10422 -16.50234 -16.39168 -15.64329 -14.77188 -14.34187 -14.07101 -13.53541 -13.46943 -13.11415 -12.90904 -12.66290 -12.49936 -12.31008 -12.06351 -11.85112 -11.63391 -11.07609 -10.68600 -10.25958 -10.06589 -8.27594 -6.44857 1.41729 1.43622 1.54442 2.36489 2.78374 3.01447 3.87743 3.96876 4.08428 4.23023 4.37874 4.43584 4.53696 4.55559 4.87385 4.94566 5.01339 5.03824 5.06515 5.30045 5.32353 5.61386 5.75723 6.03839 6.44766 6.65666 7.28390 7.50102 8.79955 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.054638 B = 0.010981 C = 0.010031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.339782 B = 2549.330786 C = 2790.701406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.397 6.397 4 C 0.090 3.910 5 C -0.124 4.124 6 C 0.219 3.781 7 O -0.600 6.600 8 C -0.550 4.550 9 H 0.068 0.932 10 C 0.024 3.976 11 N -0.920 5.920 12 Si 0.972 3.028 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.267 1.267 16 C -0.167 4.167 17 H 0.055 0.945 18 H 0.095 0.905 19 H 0.062 0.938 20 H 0.045 0.955 21 H 0.057 0.943 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.381 0.619 26 H 0.273 0.727 27 H 0.055 0.945 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -6.258 3.096 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 O -0.317 6.317 4 C 0.033 3.967 5 C -0.162 4.162 6 C 0.179 3.821 7 O -0.412 6.412 8 C -0.587 4.587 9 H 0.086 0.914 10 C -0.176 4.176 11 N -0.561 5.561 12 Si 0.796 3.204 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.191 1.191 16 C -0.205 4.205 17 H 0.075 0.925 18 H 0.113 0.887 19 H 0.081 0.919 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.836 -5.927 3.383 9.659 hybrid contribution 1.420 -0.522 -0.652 1.647 sum -5.416 -6.449 2.731 8.853 Atomic orbital electron populations 1.21749 0.92136 1.03527 1.02688 1.22757 0.96865 0.83248 1.00466 1.87876 1.21043 1.28006 1.94755 1.23094 0.79736 0.97414 0.96473 1.23313 0.97486 0.97011 0.98399 1.19918 0.91208 0.80173 0.90763 1.86046 1.65635 1.30081 1.59396 1.21652 1.00611 1.33122 1.03322 0.91370 1.25876 1.02006 0.95601 0.94116 1.69536 1.35025 1.43669 1.07846 0.85350 0.78013 0.78453 0.78597 1.19677 1.20565 1.19133 1.24003 0.98946 1.00181 0.97410 0.92547 0.88675 0.91936 0.93622 0.92438 0.88917 0.90944 0.90910 0.76638 0.91694 0.92611 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 10.28 71.98 0.74 -2.46 15 2 C 0.04 1.24 6.50 71.98 0.47 1.70 15 3 O -0.40 -15.24 10.35 -148.98 -1.54 -16.78 15 4 C 0.09 3.83 4.03 31.12 0.13 3.96 15 5 C -0.12 -5.69 7.32 31.12 0.23 -5.46 15 6 C 0.22 11.60 1.43 -11.02 -0.02 11.58 15 7 O -0.60 -34.10 13.48 -148.98 -2.01 -36.11 15 8 C -0.55 -29.80 8.30 25.60 0.21 -29.59 15 9 H 0.07 3.57 7.81 -2.91 -0.02 3.55 15 10 C 0.02 1.26 5.39 84.65 0.46 1.71 15 11 N -0.92 -50.61 11.19 21.45 0.24 -50.37 15 12 Si 0.97 41.65 29.54 68.60 2.03 43.68 15 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 14 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 16 C -0.17 -8.20 7.32 31.12 0.23 -7.98 15 17 H 0.06 1.30 8.14 -2.39 -0.02 1.28 15 18 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.06 1.49 8.14 -2.38 -0.02 1.47 15 22 H 0.09 3.73 7.87 -2.39 -0.02 3.71 15 23 H 0.07 3.10 8.09 -2.39 -0.02 3.08 15 24 H 0.07 3.30 8.14 -2.38 -0.02 3.28 15 25 H 0.38 21.99 6.56 -74.06 -0.49 21.50 15 26 H 0.27 14.13 8.31 -92.71 -0.77 13.36 15 27 H 0.06 2.77 8.14 -2.39 -0.02 2.75 15 28 H 0.04 2.28 8.10 -2.39 -0.02 2.27 15 Total: -1.00 -59.61 240.19 1.81 -57.80 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.65 Total: 28.32 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 2.44 Total: -26.54 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -3.55 Total: -52.89 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -59.61 1.81 -57.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233730913.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.599 kcal (2) G-P(sol) polarization free energy of solvation -59.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds