Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86793 * 119.99572 * 2 1 4 4 H 1.48501 * 109.47769 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46916 * 120.00419 * 3 2 1 6 6 H 1.48501 * 109.46846 * 239.99586 * 3 2 1 7 7 C 1.38937 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00059 * 203.50437 * 7 2 1 9 9 N 1.37560 * 119.99839 * 23.50991 * 7 2 1 10 10 C 1.36272 * 126.51583 * 19.67677 * 9 7 2 11 11 N 1.30486 * 108.51097 * 180.02562 * 10 9 7 12 12 C 1.34245 * 109.40252 * 359.97438 * 11 10 9 13 13 C 1.50703 * 125.86036 * 179.97438 * 12 11 10 14 14 Cl 1.80299 * 109.47262 * 269.98117 * 13 12 11 15 15 C 1.34638 * 108.27877 * 359.73982 * 12 11 10 16 16 H 0.97001 * 120.00069 * 185.86418 * 1 2 3 17 17 H 1.07994 * 125.74220 * 359.97438 * 10 9 7 18 18 H 1.09001 * 109.47226 * 29.98415 * 13 12 11 19 19 H 1.09000 * 109.47266 * 149.97972 * 13 12 11 20 20 H 1.08003 * 126.58128 * 180.26633 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 1.2823 2.7465 0.0006 5 1 3.1010 1.6964 1.2125 6 1 3.1010 1.6964 -1.2125 7 6 2.0080 -1.2033 0.0005 8 1 3.0208 -1.2419 0.3736 9 7 1.4058 -2.3453 -0.4742 10 6 0.3222 -2.4081 -1.2981 11 7 0.0469 -3.6631 -1.5256 12 6 0.9255 -4.4383 -0.8703 13 6 0.9482 -5.9451 -0.8746 14 17 -0.0694 -6.5655 0.4783 15 6 1.7860 -3.6384 -0.2127 16 1 -0.4850 -0.8356 0.0858 17 1 -0.2182 -1.5616 -1.6953 18 1 0.5549 -6.3118 -1.8228 19 1 1.9732 -6.2934 -0.7475 20 1 2.6145 -3.9535 0.4043 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236014646.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = 15.793380 kcal Electronic energy + Delta-G solvation = -9174.878939 eV Core-core repulsion = 7204.224506 eV Total energy + Delta-G solvation = -1970.654433 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.61880 -36.92016 -36.21505 -33.10102 -31.56404 -27.79113 -26.41382 -22.50464 -21.07707 -20.43584 -17.34719 -16.22074 -15.88877 -15.43870 -15.15361 -14.64206 -14.16432 -14.06834 -13.78836 -12.84349 -12.26937 -11.94566 -11.55114 -11.33960 -11.27384 -10.75201 -10.55148 -9.34496 -9.08783 -6.67076 1.02861 1.39748 1.51830 1.78793 1.83724 2.23718 2.57085 2.72506 2.95384 3.69699 4.13199 4.37339 4.55237 4.60578 5.00715 5.08580 5.59709 5.82965 6.07402 6.65023 7.10333 7.45287 8.02260 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.098241 B = 0.009969 C = 0.009822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.945273 B = 2807.953514 C = 2850.154096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C -0.008 4.008 3 Si 1.139 2.861 4 H -0.275 1.275 5 H -0.254 1.254 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.115 0.885 9 N -0.275 5.275 10 C 0.082 3.918 11 N -0.519 5.519 12 C -0.062 4.062 13 C 0.083 3.917 14 Cl -0.209 7.209 15 C -0.104 4.104 16 H 0.275 0.725 17 H 0.179 0.821 18 H 0.106 0.894 19 H 0.129 0.871 20 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -4.065 -0.081 6.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.217 4.217 3 Si 0.954 3.046 4 H -0.200 1.200 5 H -0.178 1.178 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.133 0.867 9 N 0.061 4.939 10 C -0.195 4.195 11 N -0.240 5.240 12 C -0.197 4.197 13 C 0.020 3.980 14 Cl -0.183 7.183 15 C -0.246 4.246 16 H 0.087 0.913 17 H 0.196 0.804 18 H 0.125 0.875 19 H 0.147 0.853 20 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.234 -2.583 -0.500 4.985 hybrid contribution 0.390 -1.384 0.692 1.596 sum 4.625 -3.967 0.192 6.096 Atomic orbital electron populations 1.70787 1.08409 1.32227 1.37139 1.28530 0.95879 1.06461 0.90838 0.82678 0.74139 0.68650 0.79160 1.19981 1.17839 1.18640 1.21296 1.02007 0.86835 1.48589 0.86697 1.42067 1.19217 1.06112 1.26531 1.24535 0.96560 0.95752 1.02635 1.69862 1.27176 1.01031 1.25959 1.20463 0.97613 0.95770 1.05818 1.22297 0.97698 0.87249 0.90760 1.98692 1.75202 1.88712 1.55680 1.22608 1.07339 0.83682 1.10995 0.91329 0.80397 0.87534 0.85330 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.49 12.58 21.65 0.27 -46.22 14 2 C -0.01 -0.42 5.21 84.93 0.44 0.02 14 3 Si 1.14 41.40 29.98 68.60 2.06 43.46 14 4 H -0.28 -10.09 7.11 99.48 0.71 -9.38 14 5 H -0.25 -8.31 7.11 99.48 0.71 -7.60 14 6 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 7 C -0.46 -23.63 10.01 83.96 0.84 -22.78 14 8 H 0.12 5.51 7.93 -2.91 -0.02 5.49 14 9 N -0.27 -14.36 2.84 -353.65 -1.01 -15.37 14 10 C 0.08 4.38 10.34 179.87 1.86 6.24 14 11 N -0.52 -26.23 11.24 -187.35 -2.11 -28.34 14 12 C -0.06 -2.73 6.46 41.37 0.27 -2.46 14 13 C 0.08 2.71 7.19 71.24 0.51 3.22 14 14 Cl -0.21 -7.13 29.13 -2.72 -0.08 -7.21 14 15 C -0.10 -4.78 11.41 83.01 0.95 -3.83 14 16 H 0.27 15.73 6.38 -92.71 -0.59 15.14 14 17 H 0.18 9.62 6.78 -2.91 -0.02 9.60 14 18 H 0.11 3.19 8.14 -2.39 -0.02 3.17 14 19 H 0.13 3.27 8.14 -2.39 -0.02 3.25 14 20 H 0.18 6.93 8.06 -2.91 -0.02 6.90 14 Total: -1.00 -60.31 203.14 5.43 -54.88 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.42 Total: 18.39 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.87 Total: -19.59 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.84 Total: -89.92 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.06 Total: 43.46 kcal Atomic # 17 Polarization: -7.13 SS G_CDS: -0.08 Total: -7.21 kcal Total: -60.31 5.43 -54.88 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236014646.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.674 kcal (2) G-P(sol) polarization free energy of solvation -60.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds