Wall clock time and date at job start Mon Mar 30 2020 01:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00478 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 N 1.31130 * 126.55046 * 89.99950 * 11 10 9 13 13 C 1.34498 * 105.61376 * 179.97438 * 12 11 10 14 14 N 1.29948 * 107.42723 * 0.02562 * 13 12 11 15 15 O 1.21307 * 110.24543 * 359.70230 * 14 13 12 16 16 H 0.96996 * 119.99710 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 18 18 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 19 19 H 1.08004 * 126.28764 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 7 6.3433 -3.3609 1.0537 13 6 7.5822 -3.5683 0.5732 14 7 7.5039 -3.5551 -0.7238 15 8 6.3572 -3.3692 -1.0733 16 1 -0.4849 0.8400 0.0004 17 1 3.6440 -3.4314 0.8904 18 1 3.6433 -3.4317 -0.8896 19 1 8.4778 -3.7181 1.1580 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236218779.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:05 Heat of formation + Delta-G solvation = 43.502353 kcal Electronic energy + Delta-G solvation = -8892.403492 eV Core-core repulsion = 6924.994317 eV Total energy + Delta-G solvation = -1967.409175 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -46.61172 -36.82467 -34.68956 -34.42905 -30.02285 -27.87827 -25.40867 -23.56446 -20.04189 -19.18581 -18.57104 -17.13636 -16.31908 -16.13492 -15.63794 -14.90336 -14.51298 -13.49706 -13.41908 -13.08349 -13.00649 -12.73349 -12.13653 -11.93825 -11.19935 -11.16996 -10.60050 -9.08277 -8.51420 -6.26375 -0.14489 0.95487 1.31697 1.33362 1.47773 1.58689 1.80125 2.23214 2.55787 2.82520 2.88116 3.25869 3.95965 4.17210 4.51352 4.79939 4.87474 5.71169 6.14261 6.91864 7.06700 8.60775 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.088924 B = 0.010510 C = 0.009965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.799691 B = 2663.516942 C = 2809.197710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.233 1.233 7 C -0.521 4.521 8 H 0.070 0.930 9 S -0.179 6.179 10 C 0.001 3.999 11 C 0.214 3.786 12 N -0.497 5.497 13 C 0.158 3.842 14 N -0.407 5.407 15 O 0.067 5.933 16 H 0.278 0.722 17 H 0.126 0.874 18 H 0.127 0.873 19 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.375 -4.395 0.460 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.157 1.157 7 C -0.669 4.669 8 H 0.088 0.912 9 S 0.047 5.953 10 C -0.147 4.147 11 C -0.006 4.006 12 N -0.233 5.233 13 C -0.135 4.135 14 N -0.118 5.118 15 O 0.013 5.987 16 H 0.088 0.912 17 H 0.144 0.856 18 H 0.145 0.855 19 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 12.700 -3.576 0.353 13.199 hybrid contribution -1.182 -0.323 -0.007 1.225 sum 11.518 -3.899 0.346 12.165 Atomic orbital electron populations 1.70006 1.07361 1.29181 1.48571 1.25555 0.95253 1.02264 0.92775 0.85894 0.80746 0.79614 0.80280 1.18499 1.18579 1.15684 1.22256 0.88688 0.97080 1.58868 0.91157 1.84388 1.08991 1.04209 1.97709 1.21591 0.84043 0.99886 1.09231 1.28018 0.97330 0.94460 0.80814 1.72043 1.02078 1.20259 1.28909 1.28295 0.98183 0.98485 0.88511 1.74648 0.98024 1.21560 1.17544 1.85302 1.13082 1.64467 1.35898 0.91227 0.85550 0.85469 0.71487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.36 13.97 21.65 0.30 -53.06 13 2 C 0.05 2.64 5.50 84.86 0.47 3.10 13 3 Si 0.91 41.89 27.74 68.60 1.90 43.79 13 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 13 5 H -0.26 -11.43 7.11 99.48 0.71 -10.72 13 6 H -0.23 -10.43 6.74 99.48 0.67 -9.76 13 7 C -0.52 -28.30 10.04 67.95 0.68 -27.62 13 8 H 0.07 4.05 8.03 -2.91 -0.02 4.03 13 9 S -0.18 -8.06 19.39 -56.49 -1.10 -9.15 13 10 C 0.00 0.04 6.30 71.24 0.45 0.49 13 11 C 0.21 7.01 7.77 88.38 0.69 7.69 13 12 N -0.50 -15.64 11.55 -315.45 -3.64 -19.28 13 13 C 0.16 4.02 13.11 180.59 2.37 6.39 13 14 N -0.41 -12.05 12.16 -70.50 -0.86 -12.91 13 15 O 0.07 2.13 11.31 74.84 0.85 2.98 13 16 H 0.28 15.03 8.31 -92.71 -0.77 14.26 13 17 H 0.13 4.22 8.14 -2.39 -0.02 4.20 13 18 H 0.13 3.98 8.14 -2.39 -0.02 3.96 13 19 H 0.27 3.88 8.06 -2.91 -0.02 3.86 13 Total: -1.00 -62.01 200.47 3.33 -58.68 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.23 Total: -1.11 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.65 Total: -9.94 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -4.20 Total: -85.25 kcal Atomic # 8 Polarization: 2.13 SS G_CDS: 0.85 Total: 2.98 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.90 Total: 43.79 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.10 Total: -9.15 kcal Total: -62.01 3.33 -58.68 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236218779.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.182 kcal (2) G-P(sol) polarization free energy of solvation -62.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds