Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37743 * 120.11323 * 2 1 4 4 C 1.38530 * 120.21680 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.44170 * 359.97438 * 4 3 2 6 6 C 1.37707 * 120.21900 * 0.02562 * 5 4 3 7 7 C 1.40357 * 120.10998 * 180.27344 * 2 1 3 8 8 C 1.43200 * 120.21394 * 359.97438 * 7 2 1 9 9 C 3.52740 * 80.43703 * 180.25996 * 2 1 3 10 10 C 4.89696 * 74.66647 * 180.25827 * 2 1 3 11 11 H 1.07995 * 120.00055 * 110.61408 * 10 9 8 12 12 C 1.40668 * 119.99903 * 290.61509 * 10 9 8 13 13 N 1.30536 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00022 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47189 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47138 * 119.99855 * 14 12 10 17 17 H 1.48509 * 109.46836 * 239.99596 * 14 12 10 18 18 H 1.09005 * 109.46975 * 89.99502 * 1 2 3 19 19 H 1.08995 * 109.47225 * 209.99981 * 1 2 3 20 20 H 1.09004 * 109.47127 * 330.00701 * 1 2 3 21 21 H 1.08002 * 119.89467 * 0.02562 * 3 2 1 22 22 H 1.08002 * 119.77676 * 179.97438 * 4 3 2 23 23 H 1.07999 * 119.89226 * 180.02562 * 5 4 3 24 24 H 1.08002 * 120.10879 * 179.97438 * 6 5 4 25 25 H 0.97000 * 120.00027 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1915 0.0000 4 6 3.5834 1.1940 -0.0005 5 6 4.2876 0.0007 -0.0005 6 6 3.6150 -1.2010 -0.0005 7 6 2.2111 -1.2142 -0.0058 8 6 1.5022 -2.4583 -0.0112 9 6 0.9210 -3.4783 -0.0158 10 6 0.2121 -4.7226 -0.0213 11 1 0.2325 -5.3518 -0.8987 12 6 -0.5109 -5.1252 1.1162 13 7 -0.5352 -4.3647 2.1769 14 14 -1.4351 -6.7485 1.1093 15 1 -1.2495 -7.4182 -0.2030 16 1 -0.9101 -7.6215 2.1898 17 1 -2.8809 -6.4959 1.3356 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3633 0.8901 0.5137 21 1 1.6582 2.1269 0.0004 22 1 4.1181 2.1324 -0.0010 23 1 5.3675 0.0130 -0.0005 24 1 4.1657 -2.1300 -0.0010 25 1 -1.0341 -4.6421 2.9612 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238461744.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = 27.107034 kcal Electronic energy + Delta-G solvation = -9935.740161 eV Core-core repulsion = 8071.549518 eV Total energy + Delta-G solvation = -1864.190643 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.95708 -35.72773 -34.07193 -33.20086 -31.08029 -28.15577 -27.33996 -23.70467 -22.21248 -20.42368 -18.16275 -17.06568 -16.28984 -16.11676 -15.32338 -14.73147 -14.47103 -13.94382 -13.76779 -13.21628 -13.14360 -13.04025 -12.91869 -12.17591 -12.06221 -11.87719 -11.64719 -11.09484 -10.51788 -9.61457 -8.95021 -8.67887 -6.68326 0.28970 0.56203 1.33604 1.36603 1.55984 2.17618 2.21200 2.55991 3.26210 3.53497 4.06989 4.09623 4.10481 4.29028 4.47529 4.75106 4.76574 4.85139 4.99733 5.12411 5.20229 5.39115 5.57375 5.63855 5.92306 6.01540 6.22673 6.46828 6.76326 7.62884 8.41718 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.071604 B = 0.008349 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.945608 B = 3352.854878 C = 3565.918660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.108 4.108 3 C -0.116 4.116 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.139 4.139 7 C 0.045 3.955 8 C -0.402 4.402 9 C 0.009 3.991 10 C -0.487 4.487 11 H 0.099 0.901 12 C 0.030 3.970 13 N -0.870 5.870 14 Si 1.011 2.989 15 H -0.249 1.249 16 H -0.262 1.262 17 H -0.261 1.261 18 H 0.068 0.932 19 H 0.030 0.970 20 H 0.089 0.911 21 H 0.152 0.848 22 H 0.161 0.839 23 H 0.153 0.847 24 H 0.110 0.890 25 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 7.380 -1.972 8.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.134 4.134 4 C -0.146 4.146 5 C -0.136 4.136 6 C -0.158 4.158 7 C 0.045 3.955 8 C -0.405 4.405 9 C 0.008 3.992 10 C -0.519 4.519 11 H 0.117 0.883 12 C -0.181 4.181 13 N -0.498 5.498 14 Si 0.829 3.171 15 H -0.172 1.172 16 H -0.186 1.186 17 H -0.186 1.186 18 H 0.087 0.913 19 H 0.049 0.951 20 H 0.107 0.893 21 H 0.170 0.830 22 H 0.179 0.821 23 H 0.170 0.830 24 H 0.128 0.872 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.320 7.418 -1.750 8.313 hybrid contribution -0.442 -0.958 0.195 1.073 sum 2.878 6.460 -1.555 7.241 Atomic orbital electron populations 1.20638 0.91507 1.01810 1.01927 1.20455 0.96513 0.92654 1.01231 1.21228 0.95077 0.96715 1.00338 1.21603 0.93735 0.98912 1.00328 1.21320 1.01023 0.91345 0.99948 1.21541 0.92593 0.99256 1.02378 1.16472 0.92316 0.87807 0.98863 1.19237 1.13421 0.98770 1.09050 1.20654 0.92701 0.92851 0.93018 1.18771 1.30544 1.00540 1.02034 0.88331 1.27142 0.95144 1.02912 0.92855 1.69724 1.36086 1.39450 1.04523 0.84755 0.77520 0.74807 0.79997 1.17227 1.18642 1.18553 0.91323 0.95120 0.89267 0.83026 0.82148 0.82971 0.87234 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.08 9.62 71.24 0.69 -3.39 15 2 C -0.11 -4.48 5.93 -19.46 -0.12 -4.59 15 3 C -0.12 -3.59 9.68 22.22 0.22 -3.38 15 4 C -0.13 -3.48 10.05 22.42 0.23 -3.25 15 5 C -0.12 -3.64 10.03 22.22 0.22 -3.41 15 6 C -0.14 -5.73 9.79 22.67 0.22 -5.51 15 7 C 0.05 2.22 5.78 -20.99 -0.12 2.10 15 8 C -0.40 -23.92 11.76 30.02 0.35 -23.56 15 9 C 0.01 0.57 13.02 30.02 0.39 0.96 15 10 C -0.49 -29.24 9.61 24.11 0.23 -29.01 15 11 H 0.10 5.50 7.86 -2.91 -0.02 5.47 15 12 C 0.03 1.66 5.51 85.48 0.47 2.13 15 13 N -0.87 -51.29 13.26 21.96 0.29 -51.00 15 14 Si 1.01 40.45 29.57 68.60 2.03 42.48 15 15 H -0.25 -9.41 7.11 99.48 0.71 -8.70 15 16 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 18 H 0.07 2.56 8.14 -2.38 -0.02 2.54 15 19 H 0.03 1.49 7.12 -2.39 -0.02 1.47 15 20 H 0.09 2.81 8.09 -2.38 -0.02 2.79 15 21 H 0.15 3.53 8.06 -2.91 -0.02 3.50 15 22 H 0.16 2.89 8.06 -2.91 -0.02 2.86 15 23 H 0.15 3.45 8.06 -2.91 -0.02 3.43 15 24 H 0.11 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.29 15.13 8.29 -92.71 -0.77 14.36 15 Total: -1.00 -71.88 236.65 6.28 -65.60 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.18 Total: 13.84 kcal Atomic # 6 Polarization: -73.70 SS G_CDS: 2.78 Total: -70.92 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.29 Total: -51.00 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -71.88 6.28 -65.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238461744.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.708 kcal (2) G-P(sol) polarization free energy of solvation -71.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds