Wall clock time and date at job start Mon Mar 30 2020 01:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35834 * 126.20848 * 2 1 4 4 H 0.97001 * 124.33238 * 0.02830 * 3 2 1 5 5 N 1.28316 * 111.33328 * 179.77854 * 3 2 1 6 6 C 1.32883 * 110.18159 * 0.42447 * 5 3 2 7 7 C 1.41391 * 126.96472 * 179.85875 * 6 5 3 8 8 H 1.08002 * 119.99828 * 185.27109 * 7 6 5 9 9 C 1.39864 * 120.00174 * 5.00127 * 7 6 5 10 10 N 1.30896 * 119.99614 * 354.27638 * 9 7 6 11 11 Si 1.86799 * 119.99852 * 174.28007 * 9 7 6 12 12 H 1.48497 * 109.47082 * 94.98002 * 11 9 7 13 13 H 1.48505 * 109.46954 * 214.97646 * 11 9 7 14 14 H 1.48494 * 109.47228 * 334.97572 * 11 9 7 15 15 C 1.35248 * 126.20800 * 180.02562 * 2 1 3 16 16 Cl 1.73601 * 127.58246 * 359.93191 * 15 2 1 17 17 H 1.08993 * 109.47382 * 269.95657 * 1 2 3 18 18 H 1.08997 * 109.46718 * 29.96584 * 1 2 3 19 19 H 1.09008 * 109.46677 * 149.95863 * 1 2 3 20 20 H 0.97003 * 119.99208 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3094 1.0960 0.0000 4 1 1.9862 2.0106 0.0004 5 7 3.5495 0.7666 0.0046 6 6 3.6725 -0.5565 -0.0012 7 6 4.8760 -1.2986 -0.0016 8 1 4.8470 -2.3744 -0.0926 9 6 6.1043 -0.6391 0.1102 10 7 6.1477 0.6692 0.1024 11 14 7.6827 -1.6252 0.2707 12 1 8.2980 -1.7959 -1.0700 13 1 8.6280 -0.9049 1.1611 14 1 7.3768 -2.9585 0.8484 15 6 2.3059 -1.0913 -0.0005 16 17 1.8213 -2.7583 0.0004 17 1 -0.3634 -0.0008 1.0276 18 1 -0.3633 0.8903 -0.5133 19 1 -0.3633 -0.8897 -0.5145 20 1 6.9997 1.1265 0.1796 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238495191.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:42 Heat of formation + Delta-G solvation = 26.064965 kcal Electronic energy + Delta-G solvation = -9213.837373 eV Core-core repulsion = 7243.628349 eV Total energy + Delta-G solvation = -1970.209023 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.13908 -36.97719 -35.42225 -32.85906 -31.69180 -27.79338 -27.10790 -22.10231 -21.37455 -18.32075 -17.95221 -16.46094 -15.84056 -15.07154 -14.80416 -14.19057 -13.54648 -13.25926 -12.87938 -12.70441 -12.55739 -12.48674 -11.97233 -11.49500 -11.17588 -10.35558 -9.50190 -9.03848 -8.35075 -6.27209 1.40017 1.44111 1.54535 1.58857 1.70226 2.26846 2.33508 3.05333 3.52476 4.13777 4.47758 4.82665 4.85784 5.07520 5.32788 5.40960 5.58445 6.37357 6.85932 6.91180 7.21740 8.23147 8.64948 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.053396 B = 0.014784 C = 0.011659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.259527 B = 1893.526729 C = 2400.976100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.025 3.975 3 N -0.429 5.429 4 H 0.438 0.562 5 N -0.368 5.368 6 C 0.173 3.827 7 C -0.474 4.474 8 H 0.081 0.919 9 C 0.025 3.975 10 N -0.817 5.817 11 Si 0.983 3.017 12 H -0.265 1.265 13 H -0.272 1.272 14 H -0.258 1.258 15 C -0.242 4.242 16 Cl -0.059 7.059 17 H 0.085 0.915 18 H 0.089 0.911 19 H 0.080 0.920 20 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -1.469 0.177 7.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 N -0.138 5.138 4 H 0.281 0.719 5 N -0.201 5.201 6 C 0.022 3.978 7 C -0.513 4.513 8 H 0.099 0.901 9 C -0.190 4.190 10 N -0.446 5.446 11 Si 0.805 3.195 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.182 1.182 15 C -0.281 4.281 16 Cl -0.032 7.032 17 H 0.103 0.897 18 H 0.108 0.892 19 H 0.099 0.901 20 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.416 -0.402 0.189 6.431 hybrid contribution 0.164 -0.691 0.046 0.711 sum -6.252 -1.092 0.235 6.351 Atomic orbital electron populations 1.20345 0.84534 1.04291 1.03723 1.21328 0.95612 0.87053 1.06409 1.43190 1.03530 1.07881 1.59191 0.71922 1.74607 0.97323 1.14935 1.33228 1.20737 0.91943 0.88379 0.96738 1.18861 0.89207 0.94172 1.49024 0.90052 1.26693 1.03641 0.95912 0.92740 1.70081 1.27683 1.09712 1.37119 0.85174 0.76513 0.78940 0.78909 1.19017 1.19651 1.18189 1.21958 0.94065 0.84881 1.27229 1.98158 1.91047 1.15909 1.98043 0.89660 0.89204 0.90101 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 10.31 71.24 0.73 -1.19 14 2 C 0.03 1.04 7.23 41.25 0.30 1.33 14 3 N -0.43 -18.96 6.79 -47.57 -0.32 -19.29 14 4 H 0.44 15.34 8.96 -220.07 -1.97 13.36 14 5 N -0.37 -20.67 10.54 -48.42 -0.51 -21.18 14 6 C 0.17 9.99 6.95 41.99 0.29 10.28 14 7 C -0.47 -27.63 9.44 23.44 0.22 -27.41 14 8 H 0.08 4.57 7.85 -2.91 -0.02 4.55 14 9 C 0.03 1.39 5.49 85.23 0.47 1.86 14 10 N -0.82 -47.37 12.02 21.81 0.26 -47.11 14 11 Si 0.98 41.77 29.56 68.60 2.03 43.79 14 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 14 14 H -0.26 -10.61 7.11 99.48 0.71 -9.91 14 15 C -0.24 -11.75 7.02 23.81 0.17 -11.58 14 16 Cl -0.06 -2.46 29.08 -2.72 -0.08 -2.54 14 17 H 0.08 2.04 8.14 -2.39 -0.02 2.02 14 18 H 0.09 1.91 8.14 -2.39 -0.02 1.89 14 19 H 0.08 2.12 8.03 -2.38 -0.02 2.10 14 20 H 0.27 14.54 8.30 -92.71 -0.77 13.77 14 Total: -1.00 -68.53 205.18 2.86 -65.67 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -0.70 Total: 7.37 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 2.18 Total: -26.72 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -0.57 Total: -87.57 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.08 Total: -2.54 kcal Total: -68.53 2.86 -65.67 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238495191.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.739 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds