Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38567 * 119.89130 * 2 1 4 4 C 1.38517 * 120.44087 * 179.72891 * 3 2 1 5 5 C 1.37747 * 120.21920 * 0.54429 * 4 3 2 6 6 C 1.40362 * 119.77309 * 359.73227 * 5 4 3 7 7 C 1.43195 * 120.21270 * 179.97438 * 6 5 4 8 8 C 4.84120 * 134.71292 * 180.28931 * 2 1 3 9 9 C 6.23850 * 131.44387 * 180.29160 * 2 1 3 10 10 H 1.08001 * 120.00115 * 264.70971 * 9 8 7 11 11 C 1.40672 * 120.00074 * 84.70810 * 9 8 7 12 12 N 1.30536 * 119.99890 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00054 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47075 * 90.00092 * 13 11 9 15 15 H 1.48503 * 109.47224 * 209.99847 * 13 11 9 16 16 H 1.48495 * 109.47407 * 330.00266 * 13 11 9 17 17 C 1.37698 * 119.88769 * 180.27455 * 2 1 3 18 18 H 1.09001 * 109.46953 * 269.72504 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.72102 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.72733 * 1 2 3 21 21 H 1.08005 * 119.77814 * 359.97438 * 3 2 1 22 22 H 1.07999 * 119.89232 * 180.25852 * 4 3 2 23 23 H 1.07996 * 120.11519 * 179.75272 * 5 4 3 24 24 H 0.96995 * 119.99923 * 180.02562 * 12 11 9 25 25 H 1.07997 * 120.11247 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.2013 0.0000 4 6 3.5827 1.2146 0.0057 5 6 4.2874 0.0311 0.0000 6 6 3.5972 -1.1911 -0.0058 7 6 4.3203 -2.4270 -0.0122 8 6 4.9131 -3.4403 -0.0174 9 6 5.6362 -4.6763 -0.0238 10 1 5.9855 -5.1025 0.9051 11 6 5.8917 -5.3355 -1.2400 12 7 5.4700 -4.8202 -2.3628 13 14 6.8355 -6.9474 -1.2484 14 1 5.8829 -8.0795 -1.1213 15 1 7.5875 -7.0740 -2.5227 16 1 7.7865 -6.9702 -0.1081 17 6 2.1932 -1.1938 -0.0057 18 1 -0.3633 -0.0049 1.0277 19 1 -0.3634 0.8925 -0.5095 20 1 -0.3633 -0.8875 -0.5181 21 1 1.6522 2.1336 -0.0004 22 1 4.1119 2.1561 0.0098 23 1 5.3673 0.0434 0.0004 24 1 5.6458 -5.2748 -3.2013 25 1 1.6532 -2.1291 -0.0098 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238499341.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = 43.379260 kcal Electronic energy + Delta-G solvation = -9752.813733 eV Core-core repulsion = 7889.328707 eV Total energy + Delta-G solvation = -1863.485026 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.47117 -33.70765 -32.62529 -31.45734 -29.30678 -26.42614 -25.64210 -22.15200 -20.88560 -18.37478 -16.27143 -15.35196 -14.93215 -14.59150 -13.60562 -13.40179 -12.87477 -12.53581 -11.95071 -11.93100 -11.57972 -11.30711 -11.15817 -10.72371 -10.57526 -10.26776 -9.74147 -9.25741 -8.48935 -8.16485 -7.15432 -6.66820 -4.54605 1.85732 2.01659 3.02368 3.10474 3.15225 3.94936 4.16316 4.22302 5.26804 5.30774 5.41451 5.53374 5.62951 5.69687 5.85210 5.95405 6.11009 6.14724 6.21955 6.70928 6.74837 7.02494 7.11307 7.23897 7.47333 7.61060 8.12790 8.51215 8.86099 9.75684 10.41074 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.072994 B = 0.007364 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.499422 B = 3801.461219 C = 3985.640324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.116 4.116 5 C -0.133 4.133 6 C 0.117 3.883 7 C -0.417 4.417 8 C 0.091 3.909 9 C -0.456 4.456 10 H 0.093 0.907 11 C 0.080 3.920 12 N -0.824 5.824 13 Si 0.925 3.075 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.261 1.261 17 C -0.126 4.126 18 H 0.064 0.936 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.111 0.889 22 H 0.114 0.886 23 H 0.117 0.883 24 H 0.279 0.721 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 6.177 2.155 8.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.170 4.170 4 C -0.134 4.134 5 C -0.151 4.151 6 C 0.117 3.883 7 C -0.420 4.420 8 C 0.090 3.910 9 C -0.488 4.488 10 H 0.111 0.889 11 C -0.136 4.136 12 N -0.452 5.452 13 Si 0.749 3.251 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.185 1.185 17 C -0.144 4.144 18 H 0.083 0.917 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.129 0.871 22 H 0.132 0.868 23 H 0.135 0.865 24 H 0.090 0.910 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.783 6.148 1.901 8.018 hybrid contribution 0.462 -0.706 -0.224 0.873 sum -4.321 5.442 1.677 7.148 Atomic orbital electron populations 1.20736 0.91911 1.02185 1.01729 1.19718 0.95443 0.93197 1.00640 1.20872 0.94116 0.96712 1.05328 1.20904 0.94090 0.97437 1.00988 1.21485 0.99730 0.91676 1.02183 1.16134 0.90670 0.88770 0.92758 1.18178 1.15410 0.99160 1.09226 1.19825 0.90960 0.90754 0.89481 1.18263 1.34785 1.01760 0.93967 0.88879 1.25909 0.94346 0.98880 0.94426 1.69624 1.38331 1.38307 0.98889 0.86066 0.79714 0.80782 0.78573 1.19403 1.20227 1.18522 1.21373 0.93658 0.97048 1.02327 0.91716 0.92092 0.91821 0.87125 0.86836 0.86479 0.91005 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 36.01 0.36 -1.08 15 2 C -0.09 -1.56 5.87 -104.69 -0.61 -2.17 15 3 C -0.15 -2.47 9.70 -39.36 -0.38 -2.85 15 4 C -0.12 -1.99 10.03 -39.66 -0.40 -2.38 15 5 C -0.13 -2.74 9.79 -38.96 -0.38 -3.12 15 6 C 0.12 2.78 5.78 -106.36 -0.61 2.16 15 7 C -0.42 -11.79 13.26 -38.84 -0.51 -12.31 15 8 C 0.09 2.73 13.02 -38.83 -0.51 2.22 15 9 C -0.46 -13.03 9.61 -36.74 -0.35 -13.38 15 10 H 0.09 2.47 7.86 -52.49 -0.41 2.05 15 11 C 0.08 2.15 5.51 -17.18 -0.09 2.05 15 12 N -0.82 -23.60 13.26 55.59 0.74 -22.86 15 13 Si 0.92 19.56 29.57 -169.99 -5.03 14.54 15 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 15 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 17 C -0.13 -2.63 9.44 -38.97 -0.37 -3.00 15 18 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 19 H 0.06 0.69 8.08 -51.93 -0.42 0.27 15 20 H 0.06 0.81 8.08 -51.93 -0.42 0.39 15 21 H 0.11 1.45 8.06 -52.48 -0.42 1.02 15 22 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 23 H 0.12 2.35 8.06 -52.49 -0.42 1.92 15 24 H 0.28 7.20 8.29 -40.82 -0.34 6.86 15 25 H 0.12 2.40 8.06 -52.49 -0.42 1.98 15 LS Contribution 238.83 15.07 3.60 3.60 Total: -1.00 -30.92 238.83 -7.06 -37.98 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -2.50 Total: 0.60 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: -3.87 Total: -33.85 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.74 Total: -22.86 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.92 -7.06 -37.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238499341.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.357 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds