Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38567 * 119.89130 * 2 1 4 4 C 1.38517 * 120.44087 * 179.72891 * 3 2 1 5 5 C 1.37747 * 120.21920 * 0.54429 * 4 3 2 6 6 C 1.40362 * 119.77309 * 359.73227 * 5 4 3 7 7 C 1.43195 * 120.21270 * 179.97438 * 6 5 4 8 8 C 4.84120 * 134.71292 * 180.28931 * 2 1 3 9 9 C 6.23850 * 131.44387 * 180.29160 * 2 1 3 10 10 H 1.08001 * 120.00115 * 264.70971 * 9 8 7 11 11 C 1.40672 * 120.00074 * 84.70810 * 9 8 7 12 12 N 1.30536 * 119.99890 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00054 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47075 * 90.00092 * 13 11 9 15 15 H 1.48503 * 109.47224 * 209.99847 * 13 11 9 16 16 H 1.48495 * 109.47407 * 330.00266 * 13 11 9 17 17 C 1.37698 * 119.88769 * 180.27455 * 2 1 3 18 18 H 1.09001 * 109.46953 * 269.72504 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.72102 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.72733 * 1 2 3 21 21 H 1.08005 * 119.77814 * 359.97438 * 3 2 1 22 22 H 1.07999 * 119.89232 * 180.25852 * 4 3 2 23 23 H 1.07996 * 120.11519 * 179.75272 * 5 4 3 24 24 H 0.96995 * 119.99923 * 180.02562 * 12 11 9 25 25 H 1.07997 * 120.11247 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.2013 0.0000 4 6 3.5827 1.2146 0.0057 5 6 4.2874 0.0311 0.0000 6 6 3.5972 -1.1911 -0.0058 7 6 4.3203 -2.4270 -0.0122 8 6 4.9131 -3.4403 -0.0174 9 6 5.6362 -4.6763 -0.0238 10 1 5.9855 -5.1025 0.9051 11 6 5.8917 -5.3355 -1.2400 12 7 5.4700 -4.8202 -2.3628 13 14 6.8355 -6.9474 -1.2484 14 1 5.8829 -8.0795 -1.1213 15 1 7.5875 -7.0740 -2.5227 16 1 7.7865 -6.9702 -0.1081 17 6 2.1932 -1.1938 -0.0057 18 1 -0.3633 -0.0049 1.0277 19 1 -0.3634 0.8925 -0.5095 20 1 -0.3633 -0.8875 -0.5181 21 1 1.6522 2.1336 -0.0004 22 1 4.1119 2.1561 0.0098 23 1 5.3673 0.0434 0.0004 24 1 5.6458 -5.2748 -3.2013 25 1 1.6532 -2.1291 -0.0098 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238499341.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = 25.591262 kcal Electronic energy + Delta-G solvation = -9753.585079 eV Core-core repulsion = 7889.328707 eV Total energy + Delta-G solvation = -1864.256372 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.96578 -35.77114 -34.27576 -33.07556 -31.13907 -27.88831 -27.52114 -23.79446 -22.36727 -20.36187 -17.99017 -17.15586 -16.57940 -16.06356 -15.26591 -14.61579 -14.48440 -13.95673 -13.85653 -13.24910 -13.14849 -12.98987 -12.94223 -12.20302 -12.10631 -11.93636 -11.62630 -11.09433 -10.59909 -9.63087 -8.98690 -8.69741 -6.73232 0.25176 0.52688 1.34249 1.36244 1.54895 2.16210 2.17905 2.50247 3.32373 3.41002 3.98974 4.05750 4.12270 4.29175 4.53826 4.61807 4.84113 4.87805 5.00675 5.12503 5.18340 5.35021 5.52732 5.67035 5.85573 5.98274 6.19639 6.42823 6.73702 7.57707 8.40040 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.072994 B = 0.007364 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.499422 B = 3801.461219 C = 3985.640324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.107 4.107 5 C -0.145 4.145 6 C 0.055 3.945 7 C -0.418 4.418 8 C 0.014 3.986 9 C -0.491 4.491 10 H 0.102 0.898 11 C 0.029 3.971 12 N -0.872 5.872 13 Si 1.015 2.985 14 H -0.256 1.256 15 H -0.264 1.264 16 H -0.249 1.249 17 C -0.141 4.141 18 H 0.082 0.918 19 H 0.091 0.909 20 H 0.061 0.939 21 H 0.161 0.839 22 H 0.156 0.844 23 H 0.110 0.890 24 H 0.290 0.710 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 7.663 2.135 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.124 4.124 5 C -0.164 4.164 6 C 0.055 3.945 7 C -0.421 4.421 8 C 0.012 3.988 9 C -0.523 4.523 10 H 0.120 0.880 11 C -0.181 4.181 12 N -0.500 5.500 13 Si 0.832 3.168 14 H -0.180 1.180 15 H -0.189 1.189 16 H -0.172 1.172 17 C -0.159 4.159 18 H 0.101 0.899 19 H 0.109 0.891 20 H 0.080 0.920 21 H 0.178 0.822 22 H 0.174 0.826 23 H 0.128 0.872 24 H 0.100 0.900 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.734 7.658 1.895 9.753 hybrid contribution 0.608 -0.929 -0.202 1.128 sum -5.127 6.728 1.693 8.627 Atomic orbital electron populations 1.20827 0.88541 1.03671 1.03327 1.20198 0.97849 0.92082 0.98521 1.21491 0.93893 0.98085 1.01486 1.21346 0.94887 0.97391 0.98791 1.21549 0.99749 0.92116 1.02939 1.16480 0.92148 0.88199 0.97688 1.19432 1.14964 1.00211 1.07468 1.20729 0.92675 0.92352 0.92996 1.18784 1.35840 1.02193 0.95441 0.88039 1.27206 0.94671 1.03198 0.93072 1.69722 1.39588 1.40637 1.00018 0.84758 0.78161 0.74532 0.79343 1.18003 1.18872 1.17222 1.21404 0.92572 0.98544 1.03389 0.89893 0.89054 0.92000 0.82159 0.82632 0.87224 0.90021 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 10.01 71.24 0.71 -1.70 15 2 C -0.09 -2.77 5.87 -19.91 -0.12 -2.88 15 3 C -0.13 -3.67 9.70 22.41 0.22 -3.45 15 4 C -0.11 -3.30 10.03 22.22 0.22 -3.08 15 5 C -0.15 -6.07 9.79 22.67 0.22 -5.84 15 6 C 0.05 2.73 5.78 -20.99 -0.12 2.61 15 7 C -0.42 -25.47 13.26 30.01 0.40 -25.07 15 8 C 0.01 0.88 13.02 30.02 0.39 1.27 15 9 C -0.49 -29.75 9.61 24.11 0.23 -29.51 15 10 H 0.10 5.67 7.86 -2.91 -0.02 5.64 15 11 C 0.03 1.62 5.51 85.48 0.47 2.09 15 12 N -0.87 -51.92 13.26 21.96 0.29 -51.62 15 13 Si 1.01 40.54 29.57 68.60 2.03 42.57 15 14 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 15 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 16 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 17 C -0.14 -6.00 9.44 22.67 0.21 -5.79 15 18 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 19 H 0.09 1.55 8.08 -2.39 -0.02 1.53 15 20 H 0.06 1.43 8.08 -2.39 -0.02 1.41 15 21 H 0.16 2.99 8.06 -2.91 -0.02 2.97 15 22 H 0.16 3.53 8.06 -2.91 -0.02 3.50 15 23 H 0.11 4.57 8.06 -2.91 -0.02 4.55 15 24 H 0.29 15.32 8.29 -92.71 -0.77 14.56 15 25 H 0.10 4.54 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -73.27 238.83 6.34 -66.93 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.18 Total: 13.47 kcal Atomic # 6 Polarization: -74.19 SS G_CDS: 2.84 Total: -71.35 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.29 Total: -51.62 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -73.27 6.34 -66.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238499341.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.522 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds