Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38543 * 119.77816 * 2 1 4 4 C 1.37722 * 120.21761 * 180.30266 * 3 2 1 5 5 C 1.40376 * 119.77491 * 359.43850 * 4 3 2 6 6 C 1.43205 * 120.21611 * 180.30111 * 5 4 3 7 7 C 4.84138 * 136.90387 * 0.02562 * 3 1 2 8 8 C 6.23860 * 140.17250 * 0.02562 * 3 1 2 9 9 H 1.08003 * 119.99737 * 195.82622 * 8 7 6 10 10 C 1.40669 * 120.00126 * 15.82342 * 8 7 6 11 11 N 1.30528 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99785 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47305 * 90.00195 * 12 10 8 14 14 H 1.48502 * 109.46699 * 210.00181 * 12 10 8 15 15 H 1.48504 * 109.47216 * 329.99728 * 12 10 8 16 16 C 1.40379 * 119.57016 * 0.28312 * 5 4 3 17 17 C 1.37722 * 119.77212 * 359.97438 * 16 5 4 18 18 H 1.08993 * 109.47558 * 270.25258 * 1 2 3 19 19 H 1.08998 * 109.47333 * 30.26180 * 1 2 3 20 20 H 1.09002 * 109.46800 * 150.25514 * 1 2 3 21 21 H 1.07998 * 119.89203 * 0.02562 * 3 2 1 22 22 H 1.08002 * 120.11573 * 179.72279 * 4 3 2 23 23 H 0.97000 * 119.99674 * 180.02562 * 11 10 8 24 24 H 1.08000 * 120.11071 * 180.02562 * 16 5 4 25 25 H 1.08005 * 119.88600 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2025 0.0000 4 6 3.5722 1.2131 -0.0063 5 6 4.2787 0.0000 -0.0008 6 6 5.7107 0.0000 -0.0007 7 6 6.8847 0.0000 -0.0015 8 6 8.3167 0.0001 -0.0018 9 1 8.8567 0.9000 0.2532 10 6 9.0200 -1.1719 -0.3341 11 7 8.3673 -2.2594 -0.6427 12 14 10.8880 -1.1720 -0.3338 13 1 11.3828 -1.5541 1.0131 14 1 11.3831 -2.1474 -1.3381 15 1 11.3831 0.1855 -0.6764 16 6 3.5722 -1.2130 0.0051 17 6 2.1951 -1.2024 0.0059 18 1 -0.3634 0.0045 1.0276 19 1 -0.3634 0.8876 -0.5179 20 1 -0.3633 -0.8923 -0.5099 21 1 1.6497 2.1347 0.0004 22 1 4.1069 2.1514 -0.0108 23 1 8.8523 -3.0677 -0.8715 24 1 4.1069 -2.1514 0.0098 25 1 1.6497 -2.1347 0.0108 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238540887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = 41.294402 kcal Electronic energy + Delta-G solvation = -9719.216460 eV Core-core repulsion = 7855.641028 eV Total energy + Delta-G solvation = -1863.575432 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.37122 -33.84970 -32.78327 -30.32353 -30.23311 -27.00241 -25.00805 -21.79946 -21.05227 -18.62458 -16.49837 -15.22677 -14.61474 -14.50384 -13.67906 -13.35732 -12.75483 -12.69424 -11.99807 -11.83617 -11.72961 -11.34509 -11.25246 -10.72182 -10.36936 -10.33208 -10.03376 -9.04241 -8.27756 -8.19742 -7.35507 -6.81875 -4.56295 1.90116 2.13839 2.98216 3.04367 3.09236 3.86654 4.04368 4.53945 4.77059 5.39801 5.41884 5.61648 5.79732 5.84681 5.88411 5.93205 6.11413 6.19333 6.38127 6.77782 6.82345 7.03976 7.12610 7.23283 7.53590 7.68794 8.06735 8.42603 8.71895 9.70409 10.26225 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.108577 B = 0.006909 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.819347 B = 4051.549202 C = 4284.920345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.144 4.144 3 C -0.108 4.108 4 C -0.147 4.147 5 C 0.115 3.885 6 C -0.403 4.403 7 C 0.074 3.926 8 C -0.433 4.433 9 H 0.095 0.905 10 C 0.076 3.924 11 N -0.810 5.810 12 Si 0.927 3.073 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.139 4.139 17 C -0.107 4.107 18 H 0.058 0.942 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.110 0.890 22 H 0.114 0.886 23 H 0.282 0.718 24 H 0.118 0.882 25 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 1.737 0.538 7.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C -0.126 4.126 4 C -0.165 4.165 5 C 0.115 3.885 6 C -0.405 4.405 7 C 0.073 3.927 8 C -0.464 4.464 9 H 0.113 0.887 10 C -0.141 4.141 11 N -0.436 5.436 12 Si 0.751 3.249 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.183 1.183 16 C -0.158 4.158 17 C -0.125 4.125 18 H 0.077 0.923 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.128 0.872 22 H 0.132 0.868 23 H 0.093 0.907 24 H 0.136 0.864 25 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.164 1.489 0.462 7.332 hybrid contribution 0.865 -0.202 -0.050 0.889 sum -6.299 1.287 0.412 6.443 Atomic orbital electron populations 1.20626 0.92253 1.01681 1.01217 1.19700 0.95140 0.93291 1.06286 1.20709 0.93875 0.96724 1.01275 1.21206 0.93480 0.97317 1.04501 1.16163 0.87532 0.92106 0.92698 1.18262 0.90649 1.08738 1.22891 1.19739 0.90782 0.93536 0.88667 1.18399 0.85056 0.97707 1.45207 0.88746 1.26038 1.01532 0.94286 0.92266 1.69617 1.38684 1.01514 1.33780 0.86011 0.80669 0.79328 0.78895 1.19221 1.20058 1.18346 1.21288 0.93384 0.97704 1.03380 1.20749 0.93920 0.96766 1.01074 0.92294 0.92434 0.92407 0.87151 0.86804 0.90702 0.86441 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.00 36.00 0.36 -0.91 15 2 C -0.14 -2.43 5.90 -104.40 -0.62 -3.04 15 3 C -0.11 -1.90 9.67 -39.66 -0.38 -2.28 15 4 C -0.15 -3.05 9.79 -38.97 -0.38 -3.43 15 5 C 0.12 2.78 5.78 -106.36 -0.61 2.17 15 6 C -0.40 -11.39 13.26 -38.83 -0.51 -11.91 15 7 C 0.07 2.21 13.02 -38.84 -0.51 1.70 15 8 C -0.43 -12.14 9.61 -36.74 -0.35 -12.49 15 9 H 0.09 2.43 7.86 -52.48 -0.41 2.02 15 10 C 0.08 2.00 5.51 -17.19 -0.09 1.90 15 11 N -0.81 -22.53 13.25 55.59 0.74 -21.80 15 12 Si 0.93 18.99 29.57 -169.99 -5.03 13.97 15 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 14 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 15 H -0.26 -5.15 7.11 56.52 0.40 -4.74 15 16 C -0.14 -3.03 9.79 -38.96 -0.38 -3.42 15 17 C -0.11 -1.94 9.67 -39.66 -0.38 -2.33 15 18 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 19 H 0.06 0.65 8.08 -51.93 -0.42 0.23 15 20 H 0.06 0.66 8.08 -51.93 -0.42 0.24 15 21 H 0.11 1.60 8.06 -52.49 -0.42 1.18 15 22 H 0.11 2.24 8.06 -52.49 -0.42 1.82 15 23 H 0.28 7.02 8.29 -40.82 -0.34 6.68 15 24 H 0.12 2.60 8.06 -52.49 -0.42 2.17 15 25 H 0.11 1.69 8.06 -52.48 -0.42 1.27 15 LS Contribution 238.83 15.07 3.60 3.60 Total: -1.00 -30.10 238.83 -7.06 -37.16 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.50 Total: 1.10 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -3.87 Total: -34.03 kcal Atomic # 7 Polarization: -22.53 SS G_CDS: 0.74 Total: -21.80 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.10 -7.06 -37.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238540887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.451 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds