Wall clock time and date at job start Mon Mar 30 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46885 * 239.99876 * 3 2 1 5 5 H 1.48497 * 109.47414 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46895 * 120.00178 * 3 2 1 7 7 C 1.37878 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99741 * 179.72700 * 7 2 1 9 9 C 1.50697 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46792 * 175.32150 * 9 7 2 11 11 C 1.53006 * 109.82470 * 181.53759 * 10 9 7 12 12 O 1.42900 * 109.46623 * 58.91095 * 11 10 9 13 13 C 1.54384 * 109.83083 * 60.65382 * 10 9 7 14 14 C 1.55453 * 102.18600 * 219.18220 * 13 10 9 15 15 C 1.54948 * 100.98979 * 34.03657 * 14 13 10 16 16 O 1.43238 * 109.83174 * 302.42553 * 10 9 7 17 17 H 0.96995 * 120.00321 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47520 * 295.31999 * 9 7 2 19 19 H 1.09001 * 109.47179 * 55.32779 * 9 7 2 20 20 H 1.08997 * 109.47015 * 178.90797 * 11 10 9 21 21 H 1.09002 * 109.46853 * 298.91129 * 11 10 9 22 22 H 0.96700 * 113.99501 * 179.97438 * 12 11 10 23 23 H 1.09002 * 110.84540 * 337.31514 * 13 10 9 24 24 H 1.08999 * 110.84786 * 100.94042 * 13 10 9 25 25 H 1.09001 * 111.06110 * 276.12750 * 14 13 10 26 26 H 1.09000 * 111.18686 * 152.00646 * 14 13 10 27 27 H 1.08998 * 110.31599 * 204.69163 * 15 14 13 28 28 H 1.09004 * 110.30967 * 82.52343 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0050 9 6 1.2511 -2.4991 -0.0005 10 6 2.2411 -3.6596 -0.1188 11 6 1.4820 -4.9874 -0.1581 12 8 0.5843 -4.9900 -1.2699 13 6 3.2102 -3.6458 1.0829 14 6 4.5616 -4.0328 0.4191 15 6 4.4110 -3.3627 -0.9699 16 8 3.0233 -3.5116 -1.3097 17 1 -0.4850 0.8400 0.0004 18 1 0.6891 -2.5943 0.9286 19 1 0.5628 -2.5212 -0.8455 20 1 2.1912 -5.8085 -0.2619 21 1 0.9166 -5.1101 0.7657 22 1 0.0687 -5.8035 -1.3572 23 1 3.2662 -2.6509 1.5246 24 1 2.9160 -4.3860 1.8270 25 1 4.6562 -5.1146 0.3250 26 1 5.4046 -3.6134 0.9682 27 1 5.0368 -3.8696 -1.7044 28 1 4.6750 -2.3068 -0.9112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238691812.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:15 Heat of formation + Delta-G solvation = -104.653011 kcal Electronic energy + Delta-G solvation = -12076.649502 eV Core-core repulsion = 9899.436395 eV Total energy + Delta-G solvation = -2177.213107 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.07037 -35.82247 -32.99035 -31.46927 -30.49753 -26.98364 -24.65410 -22.77097 -21.20368 -19.00905 -16.82273 -16.52735 -15.33983 -14.88414 -14.58858 -14.04160 -13.19201 -12.88860 -12.76438 -12.08585 -11.44056 -11.32123 -11.02568 -10.76702 -10.70412 -10.54347 -10.29042 -10.07247 -9.69800 -9.28161 -8.93106 -8.31036 -8.23763 -5.88515 -3.88360 3.38419 3.43123 3.45383 4.53801 4.56434 4.89959 5.18435 5.41331 5.46964 5.62726 5.72203 5.82770 5.94922 5.97345 6.22106 6.27772 6.44880 6.48597 6.81453 7.09119 7.57812 7.84549 8.10283 8.16481 8.28839 8.53764 9.15945 9.72421 11.23297 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.041598 B = 0.014972 C = 0.012333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.952278 B = 1869.739897 C = 2269.771254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.504 4.504 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.113 3.887 11 C 0.078 3.922 12 O -0.552 6.552 13 C -0.139 4.139 14 C -0.158 4.158 15 C 0.053 3.947 16 O -0.355 6.355 17 H 0.259 0.741 18 H 0.018 0.982 19 H 0.037 0.963 20 H 0.032 0.968 21 H 0.046 0.954 22 H 0.363 0.637 23 H 0.099 0.901 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -8.850 1.849 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.543 4.543 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.074 3.926 11 C 0.000 4.000 12 O -0.355 6.355 13 C -0.177 4.177 14 C -0.196 4.196 15 C -0.024 4.024 16 O -0.274 6.274 17 H 0.069 0.931 18 H 0.036 0.964 19 H 0.055 0.945 20 H 0.050 0.950 21 H 0.064 0.936 22 H 0.207 0.793 23 H 0.117 0.883 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.056 -8.120 1.556 10.248 hybrid contribution 0.343 0.350 0.340 0.596 sum 6.399 -7.770 1.897 10.243 Atomic orbital electron populations 1.69963 1.05969 1.26420 1.51287 1.24987 0.94790 0.98987 0.95756 0.86719 0.79615 0.83564 0.78443 1.20328 1.21381 1.20431 1.21100 0.92826 0.90703 1.49647 0.92657 1.19330 0.93709 0.90533 0.97705 1.22358 0.92163 0.94443 0.83632 1.22606 0.91336 0.97650 0.88438 1.86722 1.57171 1.41839 1.49750 1.23178 0.93292 1.03536 0.97665 1.23271 0.98551 1.00262 0.97503 1.23245 0.84930 0.99633 0.94627 1.88477 1.15679 1.93705 1.29498 0.93127 0.96381 0.94463 0.94986 0.93558 0.79298 0.88257 0.91661 0.91676 0.90824 0.91448 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.07 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 15 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 7 C -0.50 -14.54 7.68 -34.44 -0.26 -14.81 15 8 H 0.06 1.54 5.77 -52.49 -0.30 1.23 15 9 C 0.02 0.66 4.15 -27.88 -0.12 0.55 15 10 C 0.11 2.51 0.71 -89.89 -0.06 2.44 15 11 C 0.08 1.46 6.04 37.16 0.22 1.68 15 12 O -0.55 -10.90 12.87 -42.28 -0.54 -11.45 15 13 C -0.14 -2.58 5.75 -24.70 -0.14 -2.72 15 14 C -0.16 -2.50 7.16 -24.40 -0.17 -2.67 15 15 C 0.05 0.98 7.30 38.19 0.28 1.26 15 16 O -0.35 -8.28 10.18 -42.28 -0.43 -8.71 15 17 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 18 H 0.02 0.51 8.14 -51.93 -0.42 0.08 15 19 H 0.04 1.15 7.63 -51.93 -0.40 0.75 15 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 22 H 0.36 4.85 9.12 45.56 0.42 5.27 15 23 H 0.10 2.04 6.59 -51.93 -0.34 1.69 15 24 H 0.06 1.03 7.82 -51.93 -0.41 0.63 15 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 28 H 0.06 1.15 7.35 -51.93 -0.38 0.76 15 LS Contribution 232.89 15.07 3.51 3.51 Total: -1.00 -33.77 232.89 -5.19 -38.96 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.08 Total: 0.28 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.35 Total: -12.75 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.74 Total: -27.07 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.97 Total: -20.15 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -33.77 -5.19 -38.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238691812.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.696 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds