Wall clock time and date at job start Mon Mar 30 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46885 * 239.99876 * 3 2 1 5 5 H 1.48497 * 109.47414 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46895 * 120.00178 * 3 2 1 7 7 C 1.37878 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99741 * 179.72700 * 7 2 1 9 9 C 1.50697 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46792 * 175.32150 * 9 7 2 11 11 C 1.53006 * 109.82470 * 181.53759 * 10 9 7 12 12 O 1.42900 * 109.46623 * 58.91095 * 11 10 9 13 13 C 1.54384 * 109.83083 * 60.65382 * 10 9 7 14 14 C 1.55453 * 102.18600 * 219.18220 * 13 10 9 15 15 C 1.54948 * 100.98979 * 34.03657 * 14 13 10 16 16 O 1.43238 * 109.83174 * 302.42553 * 10 9 7 17 17 H 0.96995 * 120.00321 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47520 * 295.31999 * 9 7 2 19 19 H 1.09001 * 109.47179 * 55.32779 * 9 7 2 20 20 H 1.08997 * 109.47015 * 178.90797 * 11 10 9 21 21 H 1.09002 * 109.46853 * 298.91129 * 11 10 9 22 22 H 0.96700 * 113.99501 * 179.97438 * 12 11 10 23 23 H 1.09002 * 110.84540 * 337.31514 * 13 10 9 24 24 H 1.08999 * 110.84786 * 100.94042 * 13 10 9 25 25 H 1.09001 * 111.06110 * 276.12750 * 14 13 10 26 26 H 1.09000 * 111.18686 * 152.00646 * 14 13 10 27 27 H 1.08998 * 110.31599 * 204.69163 * 15 14 13 28 28 H 1.09004 * 110.30967 * 82.52343 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0050 9 6 1.2511 -2.4991 -0.0005 10 6 2.2411 -3.6596 -0.1188 11 6 1.4820 -4.9874 -0.1581 12 8 0.5843 -4.9900 -1.2699 13 6 3.2102 -3.6458 1.0829 14 6 4.5616 -4.0328 0.4191 15 6 4.4110 -3.3627 -0.9699 16 8 3.0233 -3.5116 -1.3097 17 1 -0.4850 0.8400 0.0004 18 1 0.6891 -2.5943 0.9286 19 1 0.5628 -2.5212 -0.8455 20 1 2.1912 -5.8085 -0.2619 21 1 0.9166 -5.1101 0.7657 22 1 0.0687 -5.8035 -1.3572 23 1 3.2662 -2.6509 1.5246 24 1 2.9160 -4.3860 1.8270 25 1 4.6562 -5.1146 0.3250 26 1 5.4046 -3.6134 0.9682 27 1 5.0368 -3.8696 -1.7044 28 1 4.6750 -2.3068 -0.9112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238691812.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:14 Heat of formation + Delta-G solvation = -131.048084 kcal Electronic energy + Delta-G solvation = -12077.794078 eV Core-core repulsion = 9899.436395 eV Total energy + Delta-G solvation = -2178.357683 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.65824 -37.30835 -35.14730 -33.12875 -32.15523 -28.96801 -26.11387 -24.87217 -22.58155 -20.70436 -18.62612 -18.29188 -16.96868 -16.67982 -16.28918 -15.72885 -14.65970 -14.57122 -14.29335 -14.14861 -13.34662 -13.02656 -12.67318 -12.59101 -12.43399 -12.21118 -11.92092 -11.79629 -11.36051 -11.03082 -10.78313 -10.51420 -10.03127 -8.14495 -6.22364 1.37371 1.41837 1.48815 2.42450 3.06832 3.20215 3.53402 3.80244 4.11727 4.19030 4.31686 4.38706 4.53702 4.61186 4.89281 4.97456 5.00800 5.06404 5.26182 5.41013 5.45928 5.63296 5.86323 6.27766 6.54179 6.90678 7.07280 7.43311 8.98106 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.041598 B = 0.014972 C = 0.012333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.952278 B = 1869.739897 C = 2269.771254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.104 3.896 11 C 0.079 3.921 12 O -0.586 6.586 13 C -0.138 4.138 14 C -0.140 4.140 15 C 0.039 3.961 16 O -0.390 6.390 17 H 0.260 0.740 18 H -0.002 1.002 19 H -0.015 1.015 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.388 0.612 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 -9.723 2.525 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.553 4.553 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.065 3.935 11 C 0.002 3.998 12 O -0.393 6.393 13 C -0.175 4.175 14 C -0.177 4.177 15 C -0.037 4.037 16 O -0.310 6.310 17 H 0.069 0.931 18 H 0.016 0.984 19 H 0.003 0.997 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.236 0.764 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.142 -9.020 2.239 12.356 hybrid contribution -0.339 0.592 0.088 0.688 sum 7.803 -8.428 2.327 11.719 Atomic orbital electron populations 1.70122 1.07834 1.27439 1.52559 1.25978 0.95725 1.03256 0.95403 0.85568 0.78316 0.78471 0.79101 1.19846 1.21001 1.18526 1.21495 0.93337 0.91654 1.48834 0.91917 1.19165 0.94044 0.93155 0.94342 1.22350 0.92109 0.93906 0.85115 1.22601 0.91831 0.96614 0.88796 1.86660 1.58036 1.44238 1.50382 1.23107 0.94276 1.03202 0.96947 1.23242 0.97491 1.01922 0.95039 1.23513 0.83151 0.99454 0.97606 1.88431 1.18097 1.93817 1.30668 0.93093 0.98392 0.99659 0.91509 0.92064 0.76350 0.90970 0.88522 0.88701 0.88292 0.88550 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.04 13.29 21.45 0.28 -59.76 15 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 15 3 Si 0.96 46.08 29.54 68.60 2.03 48.11 15 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 15 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 15 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.52 -30.37 7.68 25.60 0.20 -30.18 15 8 H 0.06 3.52 5.77 -2.91 -0.02 3.50 15 9 C 0.03 1.70 4.15 29.85 0.12 1.83 15 10 C 0.10 4.56 0.71 -10.32 -0.01 4.55 15 11 C 0.08 2.83 6.04 71.98 0.43 3.27 15 12 O -0.59 -22.97 12.87 -142.24 -1.83 -24.80 15 13 C -0.14 -4.81 5.75 31.91 0.18 -4.63 15 14 C -0.14 -3.86 7.16 32.10 0.23 -3.63 15 15 C 0.04 1.37 7.30 72.65 0.53 1.90 15 16 O -0.39 -18.00 10.18 -142.24 -1.45 -19.44 15 17 H 0.26 15.69 8.31 -92.71 -0.77 14.92 15 18 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 19 H -0.02 -0.99 7.63 -2.39 -0.02 -1.01 15 20 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.39 9.98 9.12 -74.06 -0.68 9.30 15 23 H 0.07 2.89 6.59 -2.39 -0.02 2.88 15 24 H 0.10 2.73 7.82 -2.39 -0.02 2.71 15 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 27 H 0.10 2.77 8.14 -2.39 -0.02 2.76 15 28 H 0.04 1.51 7.35 -2.38 -0.02 1.49 15 Total: -1.00 -75.55 232.89 1.66 -73.89 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.47 Total: 8.84 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 2.15 Total: -26.85 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.28 Total: -59.76 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -3.28 Total: -44.24 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.55 1.66 -73.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238691812.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.156 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds