Wall clock time and date at job start Mon Mar 30 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00229 * 2 1 4 4 H 1.48506 * 109.47061 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46909 * 120.00007 * 3 2 1 6 6 H 1.48497 * 109.47355 * 240.00371 * 3 2 1 7 7 C 1.37872 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 175.65238 * 7 2 1 9 9 C 1.50702 * 120.00130 * 355.64529 * 7 2 1 10 10 H 1.09002 * 109.46834 * 54.95192 * 9 7 2 11 11 C 1.52996 * 109.47347 * 294.94914 * 9 7 2 12 12 F 1.39899 * 109.46953 * 294.90175 * 11 9 7 13 13 C 1.53003 * 109.47081 * 174.94746 * 9 7 2 14 14 C 1.54261 * 110.03139 * 302.36366 * 13 9 7 15 15 C 1.54964 * 104.15912 * 217.13546 * 14 13 9 16 16 C 1.54890 * 102.77732 * 37.89006 * 15 14 13 17 17 C 1.53875 * 110.03112 * 185.14543 * 13 9 7 18 18 H 0.96993 * 120.00421 * 174.51441 * 1 2 3 19 19 H 1.08997 * 109.47294 * 54.90249 * 11 9 7 20 20 H 1.08998 * 109.47231 * 174.90228 * 11 9 7 21 21 H 1.08997 * 110.01623 * 63.75609 * 13 9 7 22 22 H 1.08998 * 110.49182 * 335.78590 * 14 13 9 23 23 H 1.09003 * 110.48538 * 98.42790 * 14 13 9 24 24 H 1.09003 * 110.72366 * 279.57222 * 15 14 13 25 25 H 1.08999 * 110.92147 * 156.29797 * 15 14 13 26 26 H 1.08995 * 110.48593 * 203.40212 * 16 15 14 27 27 H 1.09002 * 110.59842 * 80.81925 * 16 15 14 28 28 H 1.08991 * 110.03342 * 238.57026 * 17 13 9 29 29 H 1.09003 * 110.03097 * 359.95329 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0822 -1.1954 -0.0714 9 6 1.2542 -2.4973 0.0980 10 1 0.5077 -2.5475 -0.6947 11 6 0.5601 -2.5846 1.4586 12 9 1.5240 -2.6373 2.4712 13 6 2.2346 -3.6626 -0.0502 14 6 2.9851 -3.5541 -1.3936 15 6 3.1270 -5.0225 -1.8682 16 6 1.7777 -5.6522 -1.4418 17 6 1.4674 -4.9962 -0.0805 18 1 -0.4850 -0.8361 -0.0803 19 1 -0.0700 -1.7069 1.6021 20 1 -0.0551 -3.4836 1.4956 21 1 2.9455 -3.6595 0.7760 22 1 2.4022 -2.9762 -2.1107 23 1 3.9666 -3.1033 -1.2468 24 1 3.9590 -5.5126 -1.3625 25 1 3.2516 -5.0716 -2.9499 26 1 1.8787 -6.7318 -1.3308 27 1 0.9982 -5.4155 -2.1659 28 1 1.8066 -5.6405 0.7305 29 1 0.3968 -4.8132 0.0112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257913038.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:58 Heat of formation + Delta-G solvation = -87.168326 kcal Electronic energy + Delta-G solvation = -11966.327686 eV Core-core repulsion = 9802.245562 eV Total energy + Delta-G solvation = -2164.082125 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.30654 -37.81090 -33.84924 -30.43331 -28.21200 -26.27777 -24.61538 -21.19695 -20.07042 -18.63152 -16.94575 -15.27944 -14.91053 -14.57865 -13.86342 -13.79569 -13.65944 -12.78079 -12.37041 -12.13991 -11.08345 -10.87041 -10.69609 -10.52913 -10.43666 -10.34016 -10.16419 -10.04948 -9.88689 -9.56303 -9.12206 -8.40488 -8.34470 -6.34407 -4.06635 3.45001 3.47981 3.65621 4.54316 5.19021 5.26337 5.30264 5.35423 5.90572 5.94879 6.07118 6.08533 6.16926 6.24848 6.33245 6.35546 6.43354 6.48011 6.63014 6.73299 6.88802 6.99696 7.03331 7.31821 7.55181 8.19402 8.43778 8.84936 9.61686 11.01036 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.043773 B = 0.014106 C = 0.012154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.517120 B = 1984.444228 C = 2303.292725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.579 4.579 8 H 0.052 0.948 9 C 0.010 3.990 10 H 0.034 0.966 11 C 0.059 3.941 12 F -0.227 7.227 13 C -0.076 4.076 14 C -0.100 4.100 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.125 4.125 18 H 0.267 0.733 19 H 0.072 0.928 20 H 0.033 0.967 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -7.462 -1.717 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.617 4.617 8 H 0.071 0.929 9 C -0.008 4.008 10 H 0.052 0.948 11 C 0.004 3.996 12 F -0.209 7.209 13 C -0.094 4.094 14 C -0.138 4.138 15 C -0.166 4.166 16 C -0.159 4.159 17 C -0.162 4.162 18 H 0.078 0.922 19 H 0.090 0.910 20 H 0.052 0.948 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.586 -5.811 -1.619 6.563 hybrid contribution 0.188 -1.670 0.033 1.681 sum 2.774 -7.481 -1.586 8.135 Atomic orbital electron populations 1.70839 1.06833 1.30698 1.46891 1.25801 0.96493 1.02645 0.93593 0.83609 0.75010 0.75555 0.76577 1.20843 1.21406 1.21463 1.21890 0.94611 0.91111 1.54092 0.92944 1.19501 0.94842 0.94650 0.91834 0.94835 1.22262 0.89034 1.00072 0.88251 1.92612 1.67480 1.97929 1.62871 1.21626 0.97349 0.93318 0.97118 1.22238 1.00020 0.94185 0.97357 1.22567 0.96928 0.97536 0.99602 1.22320 0.97523 0.98490 0.97562 1.22311 1.00382 0.97239 0.96283 0.92152 0.91002 0.94850 0.91927 0.91328 0.92545 0.92391 0.92531 0.92819 0.92126 0.92988 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 12.80 55.43 0.71 -26.24 15 2 C 0.02 0.50 5.24 -17.82 -0.09 0.40 15 3 Si 1.06 25.29 29.91 -169.99 -5.08 20.20 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.29 -6.53 7.11 56.52 0.40 -6.12 15 7 C -0.58 -15.95 7.65 -34.44 -0.26 -16.22 15 8 H 0.05 1.46 7.48 -52.49 -0.39 1.07 15 9 C 0.01 0.26 1.04 -91.77 -0.10 0.16 15 10 H 0.03 0.86 7.57 -51.93 -0.39 0.47 15 11 C 0.06 1.41 6.50 37.16 0.24 1.66 15 12 F -0.23 -5.70 16.42 2.25 0.04 -5.67 15 13 C -0.08 -1.59 2.34 -89.50 -0.21 -1.80 15 14 C -0.10 -1.95 5.43 -25.03 -0.14 -2.08 15 15 C -0.13 -2.02 6.91 -24.70 -0.17 -2.19 15 16 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 15 17 C -0.12 -2.21 6.00 -25.61 -0.15 -2.36 15 18 H 0.27 7.72 6.08 -40.82 -0.25 7.47 15 19 H 0.07 1.86 6.15 -51.93 -0.32 1.54 15 20 H 0.03 0.70 6.95 -51.93 -0.36 0.34 15 21 H 0.06 1.40 7.60 -51.93 -0.39 1.01 15 22 H 0.07 1.43 7.80 -51.93 -0.40 1.03 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 29 H 0.06 1.05 6.68 -51.93 -0.35 0.70 15 LS Contribution 233.53 15.07 3.52 3.52 Total: -1.00 -29.00 233.53 -6.06 -35.06 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.19 Total: -2.40 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.05 Total: -24.47 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.71 Total: -26.24 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.04 Total: -5.67 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.00 -6.06 -35.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913038.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.109 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds