Wall clock time and date at job start Mon Mar 30 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00229 * 2 1 4 4 H 1.48506 * 109.47061 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46909 * 120.00007 * 3 2 1 6 6 H 1.48497 * 109.47355 * 240.00371 * 3 2 1 7 7 C 1.37872 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 175.65238 * 7 2 1 9 9 C 1.50702 * 120.00130 * 355.64529 * 7 2 1 10 10 H 1.09002 * 109.46834 * 54.95192 * 9 7 2 11 11 C 1.52996 * 109.47347 * 294.94914 * 9 7 2 12 12 F 1.39899 * 109.46953 * 294.90175 * 11 9 7 13 13 C 1.53003 * 109.47081 * 174.94746 * 9 7 2 14 14 C 1.54261 * 110.03139 * 302.36366 * 13 9 7 15 15 C 1.54964 * 104.15912 * 217.13546 * 14 13 9 16 16 C 1.54890 * 102.77732 * 37.89006 * 15 14 13 17 17 C 1.53875 * 110.03112 * 185.14543 * 13 9 7 18 18 H 0.96993 * 120.00421 * 174.51441 * 1 2 3 19 19 H 1.08997 * 109.47294 * 54.90249 * 11 9 7 20 20 H 1.08998 * 109.47231 * 174.90228 * 11 9 7 21 21 H 1.08997 * 110.01623 * 63.75609 * 13 9 7 22 22 H 1.08998 * 110.49182 * 335.78590 * 14 13 9 23 23 H 1.09003 * 110.48538 * 98.42790 * 14 13 9 24 24 H 1.09003 * 110.72366 * 279.57222 * 15 14 13 25 25 H 1.08999 * 110.92147 * 156.29797 * 15 14 13 26 26 H 1.08995 * 110.48593 * 203.40212 * 16 15 14 27 27 H 1.09002 * 110.59842 * 80.81925 * 16 15 14 28 28 H 1.08991 * 110.03342 * 238.57026 * 17 13 9 29 29 H 1.09003 * 110.03097 * 359.95329 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0822 -1.1954 -0.0714 9 6 1.2542 -2.4973 0.0980 10 1 0.5077 -2.5475 -0.6947 11 6 0.5601 -2.5846 1.4586 12 9 1.5240 -2.6373 2.4712 13 6 2.2346 -3.6626 -0.0502 14 6 2.9851 -3.5541 -1.3936 15 6 3.1270 -5.0225 -1.8682 16 6 1.7777 -5.6522 -1.4418 17 6 1.4674 -4.9962 -0.0805 18 1 -0.4850 -0.8361 -0.0803 19 1 -0.0700 -1.7069 1.6021 20 1 -0.0551 -3.4836 1.4956 21 1 2.9455 -3.6595 0.7760 22 1 2.4022 -2.9762 -2.1107 23 1 3.9666 -3.1033 -1.2468 24 1 3.9590 -5.5126 -1.3625 25 1 3.2516 -5.0716 -2.9499 26 1 1.8787 -6.7318 -1.3308 27 1 0.9982 -5.4155 -2.1659 28 1 1.8066 -5.6405 0.7305 29 1 0.3968 -4.8132 0.0112 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257913038.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:58 Heat of formation + Delta-G solvation = -102.778438 kcal Electronic energy + Delta-G solvation = -11967.004591 eV Core-core repulsion = 9802.245562 eV Total energy + Delta-G solvation = -2164.759030 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.31150 -39.36092 -35.80813 -32.29673 -29.66404 -27.93108 -26.70162 -23.05571 -21.44299 -20.30848 -18.96987 -17.01854 -16.71116 -16.32739 -15.70004 -15.65172 -15.38739 -14.34332 -14.17645 -13.93443 -12.88598 -12.77052 -12.32252 -12.14679 -12.02406 -11.91641 -11.80468 -11.72289 -11.44572 -11.23770 -10.93592 -10.49320 -10.41639 -8.57421 -6.29990 1.52137 1.59018 1.78180 2.56843 3.17584 3.80766 3.87232 3.90223 4.08209 4.38168 4.40629 4.51649 4.62313 4.76788 4.84334 4.86642 4.93811 5.03019 5.10918 5.18362 5.26394 5.43470 5.51336 5.52726 5.71516 6.11168 6.22081 6.65277 7.44722 8.78965 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.043773 B = 0.014106 C = 0.012154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.517120 B = 1984.444228 C = 2303.292725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.031 4.031 3 Si 1.105 2.895 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.589 4.589 8 H 0.043 0.957 9 C 0.007 3.993 10 H 0.018 0.982 11 C 0.063 3.937 12 F -0.234 7.234 13 C -0.077 4.077 14 C -0.103 4.103 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.123 4.123 18 H 0.260 0.740 19 H 0.048 0.952 20 H 0.068 0.932 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -8.706 -2.116 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.229 4.229 3 Si 0.928 3.072 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.627 4.627 8 H 0.061 0.939 9 C -0.011 4.011 10 H 0.036 0.964 11 C 0.007 3.993 12 F -0.215 7.215 13 C -0.096 4.096 14 C -0.141 4.141 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.160 4.160 18 H 0.070 0.930 19 H 0.066 0.934 20 H 0.086 0.914 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.298 -7.077 -2.022 8.065 hybrid contribution -0.033 -1.297 0.172 1.308 sum 3.265 -8.373 -1.850 9.176 Atomic orbital electron populations 1.70932 1.07569 1.30363 1.48731 1.27058 0.96686 1.06020 0.93110 0.83073 0.74322 0.72188 0.77611 1.20909 1.20428 1.19556 1.22198 0.94378 0.92728 1.53396 0.93900 1.19484 0.95039 0.95071 0.91545 0.96433 1.22210 0.88771 1.00672 0.87614 1.92595 1.67846 1.97975 1.63122 1.21592 0.96676 0.93914 0.97373 1.22198 0.98855 0.96919 0.96109 1.22525 0.97771 0.94354 1.00946 1.22318 0.97170 1.00052 0.95822 1.22279 0.99575 0.95601 0.98557 0.92980 0.93394 0.91364 0.93621 0.93569 0.93347 0.90866 0.90619 0.89787 0.92058 0.91560 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 12.80 21.45 0.27 -55.77 15 2 C -0.03 -1.76 5.24 84.65 0.44 -1.32 15 3 Si 1.11 50.94 29.91 68.60 2.05 52.99 15 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.59 -32.87 7.65 25.60 0.20 -32.68 15 8 H 0.04 2.42 7.48 -2.91 -0.02 2.39 15 9 C 0.01 0.36 1.04 -11.54 -0.01 0.35 15 10 H 0.02 0.92 7.57 -2.39 -0.02 0.91 15 11 C 0.06 2.99 6.50 71.98 0.47 3.46 15 12 F -0.23 -11.67 16.42 44.97 0.74 -10.93 15 13 C -0.08 -3.18 2.34 -10.07 -0.02 -3.21 15 14 C -0.10 -3.92 5.43 31.69 0.17 -3.74 15 15 C -0.12 -3.36 6.91 31.91 0.22 -3.14 15 16 C -0.12 -3.18 6.83 31.67 0.22 -2.96 15 17 C -0.12 -4.06 6.00 31.32 0.19 -3.88 15 18 H 0.26 15.38 6.08 -92.71 -0.56 14.82 15 19 H 0.05 2.52 6.15 -2.39 -0.01 2.50 15 20 H 0.07 2.77 6.95 -2.39 -0.02 2.75 15 21 H 0.05 2.02 7.60 -2.39 -0.02 2.00 15 22 H 0.05 1.93 7.80 -2.39 -0.02 1.91 15 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 29 H 0.05 1.85 6.68 -2.39 -0.02 1.83 15 Total: -1.00 -61.74 233.53 6.25 -55.49 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.32 Total: 5.32 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 1.87 Total: -47.11 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.27 Total: -55.77 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 0.74 Total: -10.93 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 52.99 kcal Total: -61.74 6.25 -55.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913038.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.285 kcal (2) G-P(sol) polarization free energy of solvation -61.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds