Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48499 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46581 * 299.99490 * 3 2 1 6 6 H 1.48492 * 109.47381 * 59.99426 * 3 2 1 7 7 C 1.37882 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99530 * 173.17131 * 7 2 1 9 9 C 1.50694 * 120.00271 * 353.18067 * 7 2 1 10 10 H 1.09003 * 109.46814 * 334.44871 * 9 7 2 11 11 C 1.52999 * 109.47612 * 94.45398 * 9 7 2 12 12 F 1.39906 * 109.46902 * 294.77301 * 11 9 7 13 13 C 1.53004 * 109.47220 * 214.45511 * 9 7 2 14 14 C 1.54260 * 110.03296 * 177.16102 * 13 9 7 15 15 C 1.54887 * 104.19601 * 217.10133 * 14 13 9 16 16 C 1.54889 * 102.74834 * 37.94804 * 15 14 13 17 17 C 1.53881 * 110.03205 * 59.99595 * 13 9 7 18 18 H 0.96999 * 120.00194 * 184.64065 * 1 2 3 19 19 H 1.08998 * 109.47150 * 54.77550 * 11 9 7 20 20 H 1.08996 * 109.47133 * 174.77943 * 11 9 7 21 21 H 1.09001 * 110.01336 * 298.60893 * 13 9 7 22 22 H 1.08997 * 110.49088 * 335.78484 * 14 13 9 23 23 H 1.09000 * 110.48492 * 98.42706 * 14 13 9 24 24 H 1.09001 * 110.76078 * 279.62870 * 15 14 13 25 25 H 1.09002 * 110.91608 * 156.33078 * 15 14 13 26 26 H 1.08998 * 110.48972 * 203.38112 * 16 15 14 27 27 H 1.09001 * 110.59950 * 80.78811 * 16 15 14 28 28 H 1.08995 * 110.03057 * 238.57254 * 17 13 9 29 29 H 1.08998 * 110.02859 * 0.02562 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0788 -1.1975 -0.1107 9 6 1.2590 -2.4945 0.1561 10 1 0.3247 -2.3162 0.6885 11 6 0.9554 -3.0769 -1.2258 12 9 0.0742 -2.2293 -1.9057 13 6 2.1171 -3.4827 0.9487 14 6 1.3379 -4.7943 1.1769 15 6 1.7489 -5.2370 2.6031 16 6 1.8306 -3.8927 3.3681 17 6 2.4303 -2.9093 2.3419 18 1 -0.4850 -0.8373 0.0680 19 1 1.8817 -3.1686 -1.7929 20 1 0.4993 -4.0604 -1.1133 21 1 3.0436 -3.6864 0.4118 22 1 0.2641 -4.6137 1.1282 23 1 1.6329 -5.5457 0.4444 24 1 2.7194 -5.7331 2.5891 25 1 0.9915 -5.8861 3.0426 26 1 2.4851 -3.9859 4.2346 27 1 0.8372 -3.5652 3.6750 28 1 3.5087 -2.8357 2.4815 29 1 1.9706 -1.9274 2.4535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257913060.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -88.145337 kcal Electronic energy + Delta-G solvation = -11945.793827 eV Core-core repulsion = 9781.669336 eV Total energy + Delta-G solvation = -2164.124491 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.19538 -37.86972 -33.59188 -30.64516 -28.15953 -26.20626 -24.32811 -21.26183 -20.06382 -18.83229 -16.66056 -15.23371 -15.00778 -14.59401 -13.91444 -13.70393 -13.35326 -12.75376 -12.62090 -12.10671 -10.99247 -10.78789 -10.65082 -10.61463 -10.37982 -10.22608 -10.19588 -10.02904 -9.85871 -9.38227 -9.24552 -8.44029 -8.18194 -6.27707 -3.97488 3.47541 3.51310 3.64279 4.58360 5.18325 5.25146 5.31698 5.46314 5.89284 5.98871 6.01865 6.08475 6.16394 6.18653 6.23419 6.36993 6.38162 6.50767 6.66254 6.79963 6.82482 7.00923 7.07949 7.40392 7.52379 8.25218 8.52007 8.96607 9.75786 11.13211 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.015207 C = 0.012072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.036627 B = 1840.764328 C = 2318.886862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 1.069 2.931 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.597 4.597 8 H 0.049 0.951 9 C 0.006 3.994 10 H 0.045 0.955 11 C 0.068 3.932 12 F -0.218 7.218 13 C -0.073 4.073 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.105 4.105 18 H 0.274 0.726 19 H 0.049 0.951 20 H 0.033 0.967 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -7.443 3.547 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.181 4.181 3 Si 0.899 3.101 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.635 4.635 8 H 0.067 0.933 9 C -0.014 4.014 10 H 0.063 0.937 11 C 0.012 3.988 12 F -0.200 7.200 13 C -0.092 4.092 14 C -0.164 4.164 15 C -0.161 4.161 16 C -0.164 4.164 17 C -0.143 4.143 18 H 0.086 0.914 19 H 0.067 0.933 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.178 -5.773 3.467 7.446 hybrid contribution 0.220 -1.675 -0.071 1.691 sum 3.398 -7.448 3.396 8.863 Atomic orbital electron populations 1.70668 1.06828 1.31564 1.44594 1.25746 0.96521 1.02441 0.93406 0.83546 0.74510 0.75214 0.76871 1.21625 1.21475 1.21438 1.21765 0.94577 0.91188 1.55973 0.93307 1.19616 0.96816 0.94583 0.90339 0.93722 1.22331 0.90310 0.89717 0.96434 1.92707 1.71212 1.74259 1.81772 1.21651 0.98035 0.93259 0.96231 1.22562 1.00406 0.97703 0.95689 1.22471 1.00240 0.97007 0.96363 1.22405 1.00560 0.95606 0.97849 1.22032 0.99407 0.99545 0.93301 0.91390 0.93289 0.94887 0.92713 0.91988 0.92825 0.92253 0.92664 0.92805 0.92210 0.93283 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.36 55.43 0.74 -26.81 15 2 C 0.03 0.72 5.45 -17.82 -0.10 0.63 15 3 Si 1.07 25.64 29.91 -169.99 -5.08 20.55 15 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.60 -16.43 7.02 -34.44 -0.24 -16.67 15 8 H 0.05 1.35 7.82 -52.48 -0.41 0.94 15 9 C 0.01 0.14 1.24 -91.77 -0.11 0.02 15 10 H 0.04 1.19 6.47 -51.93 -0.34 0.86 15 11 C 0.07 1.56 6.78 37.16 0.25 1.81 15 12 F -0.22 -5.81 16.24 2.25 0.04 -5.78 15 13 C -0.07 -1.47 2.50 -89.50 -0.22 -1.70 15 14 C -0.13 -2.14 5.23 -25.08 -0.13 -2.28 15 15 C -0.12 -1.83 6.91 -24.74 -0.17 -2.00 15 16 C -0.13 -2.04 6.83 -25.07 -0.17 -2.21 15 17 C -0.11 -2.04 6.02 -25.61 -0.15 -2.20 15 18 H 0.27 8.41 5.93 -40.82 -0.24 8.17 15 19 H 0.05 1.09 8.14 -51.93 -0.42 0.66 15 20 H 0.03 0.66 7.12 -51.93 -0.37 0.29 15 21 H 0.05 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.06 1.10 7.77 -51.93 -0.40 0.69 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 29 H 0.08 1.76 7.10 -51.93 -0.37 1.39 15 LS Contribution 236.16 15.07 3.56 3.56 Total: -1.00 -29.82 236.16 -6.11 -35.93 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.31 Total: -2.85 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -1.05 Total: -24.60 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.04 Total: -5.78 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.82 -6.11 -35.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913060.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.217 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds